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Add test data
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.github/workflows/bwa_index.yml
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.github/workflows/bwa_index.yml
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name: bwa_index
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on:
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push:
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paths:
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- software/bwa/index/**
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- .github/workflows/bwa_index.yml
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- tests
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pull_request:
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paths:
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- software/bwa/index/**
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- .github/workflows/bwa_index.yml
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- tests
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jobs:
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ci_test:
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runs-on: ubuntu-latest
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env:
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NXF_ANSI_LOG: false
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steps:
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- uses: actions/checkout@v2
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- name: Install Nextflow
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run: |
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export NXF_VER="20.07.1"
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wget -qO- get.nextflow.io | bash
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sudo mv nextflow /usr/local/bin/
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# Test the module
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- run: nextflow run ./software/bwa/index/test/ -profile docker
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software/bwa/index/test/input/NC_010473.fa
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software/bwa/index/test/input/NC_010473.fa
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../../../../../tests/data/fasta/E_coli/NC_010473.fa
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software/bwa/index/test/output/bwa/NC_010473.fa.amb
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software/bwa/index/test/output/bwa/NC_010473.fa.amb
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4686137 1 2
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20895 1 Y
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142347 1 R
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software/bwa/index/test/output/bwa/NC_010473.fa.ann
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software/bwa/index/test/output/bwa/NC_010473.fa.ann
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4686137 1 11
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0 gi|170079663|ref|NC_010473.1| Escherichia coli str. K-12 substr. DH10B, complete genome
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0 4686137 2
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software/bwa/index/test/output/bwa/NC_010473.fa.bwt
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software/bwa/index/test/output/bwa/NC_010473.fa.bwt
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software/bwa/index/test/output/bwa/NC_010473.fa.pac
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software/bwa/index/test/output/bwa/NC_010473.fa.pac
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software/bwa/index/test/output/bwa/NC_010473.fa.sa
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software/bwa/index/test/output/bwa/NC_010473.fa.sa
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