Add test data

This commit is contained in:
drpatelh 2020-08-07 12:57:32 +01:00
parent 7604bd27fc
commit cff81ef875
7 changed files with 37 additions and 0 deletions

30
.github/workflows/bwa_index.yml vendored Normal file
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name: bwa_index
on:
push:
paths:
- software/bwa/index/**
- .github/workflows/bwa_index.yml
- tests
pull_request:
paths:
- software/bwa/index/**
- .github/workflows/bwa_index.yml
- tests
jobs:
ci_test:
runs-on: ubuntu-latest
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
run: |
export NXF_VER="20.07.1"
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
# Test the module
- run: nextflow run ./software/bwa/index/test/ -profile docker

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../../../../../tests/data/fasta/E_coli/NC_010473.fa

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4686137 1 2
20895 1 Y
142347 1 R

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4686137 1 11
0 gi|170079663|ref|NC_010473.1| Escherichia coli str. K-12 substr. DH10B, complete genome
0 4686137 2

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