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Updated the test

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This commit is contained in:
Nicolas Vannieuwkerke 2022-06-01 09:17:05 +02:00
parent 5b74a179c3
commit d4f3df4677
2 changed files with 11 additions and 5 deletions
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14
tests/modules/gatk4/composestrtablefile/main.nf
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@ -6,11 +6,17 @@ include { GATK4_COMPOSESTRTABLEFILE } from '../../../../modules/gatk4/composestr
workflow test_gatk4_composestrtablefile { workflow test_gatk4_composestrtablefile {
input = [ fasta = [
file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true), file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
file(params.test_data['homo_sapiens']['genome']['genome_fasta_fai'], checkIfExists: true), ]
fasta_fai = [
file(params.test_data['homo_sapiens']['genome']['genome_fasta_fai'], checkIfExists: true)
]
dict = [
file(params.test_data['homo_sapiens']['genome']['genome_dict'], checkIfExists: true) file(params.test_data['homo_sapiens']['genome']['genome_dict'], checkIfExists: true)
] ]
GATK4_COMPOSESTRTABLEFILE ( input ) GATK4_COMPOSESTRTABLEFILE ( fasta, fasta_fai, dict )
} }

2
tests/modules/gatk4/composestrtablefile/test.yml
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@ -1,7 +1,7 @@
- name: gatk4 composestrtablefile test_gatk4_composestrtablefile - name: gatk4 composestrtablefile test_gatk4_composestrtablefile
command: nextflow run ./tests/modules/gatk4/composestrtablefile -entry test_gatk4_composestrtablefile -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/composestrtablefile/nextflow.config command: nextflow run ./tests/modules/gatk4/composestrtablefile -entry test_gatk4_composestrtablefile -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/composestrtablefile/nextflow.config
tags: tags:
- gatk4
- gatk4/composestrtablefile - gatk4/composestrtablefile
- gatk4
files: files:
- path: output/gatk4/genome.zip - path: output/gatk4/genome.zip