[samtools] add optional csi output (#2064)
* [samtools] add optional csi output, when applicable * Remove empty line Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>master
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