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Update modules/bamtools/split/main.nf

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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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Matthias De Smet 2022-04-22 19:36:08 +02:00 committed by GitHub
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modules/bamtools/split/main.nf
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@ -21,8 +21,6 @@ process BAMTOOLS_SPLIT {
def args = task.ext.args ?: '' def args = task.ext.args ?: ''
def prefix = task.ext.prefix ?: "${meta.id}" def prefix = task.ext.prefix ?: "${meta.id}"
def input_list = bam.collect{"-in $it"}.join(' ') def input_list = bam.collect{"-in $it"}.join(' ')
def stub = !args.contains("-stub") ? "-stub ${prefix}" : ""
""" """
bamtools \\ bamtools \\
merge \\ merge \\