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Use moduleDir for conda env

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This commit is contained in:
Gregor Sturm 2020-07-14 20:37:35 +02:00
parent f7c42ac4fd
commit dd34fa5853
1 changed files with 1 additions and 2 deletions
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3
software/fastqc/main.nf
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@ -10,8 +10,7 @@ process FASTQC {
path "*.version.txt", emit: version path "*.version.txt", emit: version
container 'docker.pkg.github.com/nf-core/fastqc' container 'docker.pkg.github.com/nf-core/fastqc'
// see https://github.com/nextflow-io/nextflow/issues/1674 conda "${moduleDir}/environment.yml"
conda "../environment.yml"
publishDir "${params.out_dir}", mode: params.publish_dir_mode publishDir "${params.out_dir}", mode: params.publish_dir_mode