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chore removing file from test

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Lucpen 2022-05-02 13:15:01 +02:00
parent f231291e77
commit de40c1bf54
1 changed files with 5 additions and 5 deletions
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tests/modules/gatk4/mergebamalignment/main.nf
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@ -16,12 +16,12 @@ workflow test_gatk4_mergebamalignment {
} }
workflow test_gatk4_mergebamalignment_stubs { workflow test_gatk4_mergebamalignment_stubs {
input = [ [ id:'test' ], // meta map input = [ [ id:'test' ], // meta map
file(params.test_data['sarscov2']['illumina']['test_single_end_bam'], checkIfExists: true), "test_foo.bam",
file(params.test_data['sarscov2']['illumina']['test_unaligned_bam'], checkIfExists: true) "test_bar.bam"
] ]
fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) fasta = "genome.fasta"
dict = file(params.test_data['sarscov2']['genome']['genome_dict'], checkIfExists: true) dict = "genome.fasta.dict"
GATK4_MERGEBAMALIGNMENT ( input, fasta, dict ) GATK4_MERGEBAMALIGNMENT ( input, fasta, dict )
} }