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Code Issues Releases Packages Activity

Iqtree (#435)

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* Resolve suggests after PR review

* add newline to functions

* need variable interpolation using double quotes; remove unnecessary tag

* add a more resilient link to raw github files

* remove trailing slash

* Update software/iqtree/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
This commit is contained in:
Anthony Underwood 2021-04-12 17:01:26 +01:00 committed by GitHub
parent 3ac21ff0dc
commit df8910de4e
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2 changed files with 3 additions and 3 deletions
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4
software/iqtree/main.nf
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@ -5,7 +5,7 @@ params.options = [:]
options = initOptions(params.options) options = initOptions(params.options)
process IQTREE { process IQTREE {
tag "$variant_alignment" tag "$alignment"
label 'process_medium' label 'process_medium'
publishDir "${params.outdir}", publishDir "${params.outdir}",
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
@ -28,7 +28,7 @@ process IQTREE {
script: script:
def software = getSoftwareName(task.process) def software = getSoftwareName(task.process)
def fconst_args = constant_sites ? '-fconst $constant_sites' : '' def fconst_args = constant_sites ? "-fconst $constant_sites" : ''
def memory = task.memory.toString().replaceAll(' ', '') def memory = task.memory.toString().replaceAll(' ', '')
""" """
iqtree \\ iqtree \\

2
tests/config/test_data.config
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@ -1,5 +1,5 @@
// Base directory for test data // Base directory for test data
def test_data_dir = "https://github.com/nf-core/test-datasets/raw/modules/data/" def test_data_dir = "https://raw.githubusercontent.com/nf-core/test-datasets/modules/data"
params { params {
test_data { test_data {