millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2025-01-03 04:52:09 -05:00
Code Issues Releases Packages Activity

typo in command line (#1523)

Browse source
This commit is contained in:
Maxime U. Garcia 2022-04-13 15:15:44 +02:00 committed by GitHub
parent 8856f127c5
commit e04970b7d2
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 1 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
modules/gatk4/markduplicatesspark/main.nf
View file

@ -23,7 +23,7 @@ process GATK4_MARKDUPLICATES_SPARK {
script: script:
def args = task.ext.args ?: '' def args = task.ext.args ?: ''
prefix = task.ext.prefix ?: "${meta.id}" prefix = task.ext.prefix ?: "${meta.id}"
def input_list = bam.collect{"--INPUT $it"}.join(' ') def input_list = bam.collect{"--input $it"}.join(' ')
def avail_mem = 3 def avail_mem = 3
if (!task.memory) { if (!task.memory) {