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Update dsh-bio to 2.0.5 (#628)

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Michael L Heuer 2021-07-27 09:32:18 -05:00 committed by GitHub
parent c41c9487e9
commit e1951d54be
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4 changed files with 12 additions and 12 deletions
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6
modules/dshbio/filterbed/main.nf
View file

@ -11,11 +11,11 @@ process DSHBIO_FILTERBED {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) }
conda (params.enable_conda ? "bioconda::dsh-bio=2.0.4" : null) conda (params.enable_conda ? "bioconda::dsh-bio=2.0.5" : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.4--hdfd78af_0" container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.5--hdfd78af_0"
} else { } else {
container "quay.io/biocontainers/dsh-bio:2.0.4--hdfd78af_0" container "quay.io/biocontainers/dsh-bio:2.0.5--hdfd78af_0"
} }
input: input:

6
modules/dshbio/filtergff3/main.nf
View file

@ -11,11 +11,11 @@ process DSHBIO_FILTERGFF3 {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) }
conda (params.enable_conda ? "bioconda::dsh-bio=2.0.4" : null) conda (params.enable_conda ? "bioconda::dsh-bio=2.0.5" : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.4--hdfd78af_0" container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.5--hdfd78af_0"
} else { } else {
container "quay.io/biocontainers/dsh-bio:2.0.4--hdfd78af_0" container "quay.io/biocontainers/dsh-bio:2.0.5--hdfd78af_0"
} }
input: input:

6
modules/dshbio/splitbed/main.nf
View file

@ -11,11 +11,11 @@ process DSHBIO_SPLITBED {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) }
conda (params.enable_conda ? "bioconda::dsh-bio=2.0.4" : null) conda (params.enable_conda ? "bioconda::dsh-bio=2.0.5" : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.4--hdfd78af_0" container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.5--hdfd78af_0"
} else { } else {
container "quay.io/biocontainers/dsh-bio:2.0.4--hdfd78af_0" container "quay.io/biocontainers/dsh-bio:2.0.5--hdfd78af_0"
} }
input: input:

6
modules/dshbio/splitgff3/main.nf
View file

@ -11,11 +11,11 @@ process DSHBIO_SPLITGFF3 {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) }
conda (params.enable_conda ? "bioconda::dsh-bio=2.0.4" : null) conda (params.enable_conda ? "bioconda::dsh-bio=2.0.5" : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.4--hdfd78af_0" container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.5--hdfd78af_0"
} else { } else {
container "quay.io/biocontainers/dsh-bio:2.0.4--hdfd78af_0" container "quay.io/biocontainers/dsh-bio:2.0.5--hdfd78af_0"
} }
input: input: