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update multiqc and strelka modules version to have the same as the other modules using these ones (#1914)

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* update multiqc version in CUSTOM_DUMPSOFTWAREVERSIONS

* update stelka version in  STRELKA_GERMLINE

Co-authored-by: Alexander Peltzer <apeltzer@users.noreply.github.com>
This commit is contained in:
Maxime U. Garcia 2022-07-21 11:44:07 +02:00 committed by GitHub
parent 6b011dd148
commit e5b44499ef
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2 changed files with 5 additions and 5 deletions
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6
modules/custom/dumpsoftwareversions/main.nf
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@ -2,10 +2,10 @@ process CUSTOM_DUMPSOFTWAREVERSIONS {
label 'process_low'
// Requires `pyyaml` which does not have a dedicated container but is in the MultiQC container
conda (params.enable_conda ? "bioconda::multiqc=1.12" : null)
conda (params.enable_conda ? 'bioconda::multiqc=1.13a' : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/multiqc:1.12--pyhdfd78af_0' :
'quay.io/biocontainers/multiqc:1.12--pyhdfd78af_0' }"
'https://depot.galaxyproject.org/singularity/multiqc:1.13a--pyhdfd78af_1' :
'quay.io/biocontainers/multiqc:1.13a--pyhdfd78af_1' }"
input:
path versions

4
modules/strelka/germline/main.nf
View file

@ -4,8 +4,8 @@ process STRELKA_GERMLINE {
conda (params.enable_conda ? "bioconda::strelka=2.9.10" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/strelka:2.9.10--0' :
'quay.io/biocontainers/strelka:2.9.10--0' }"
'https://depot.galaxyproject.org/singularity/strelka:2.9.10--h9ee0642_1' :
'quay.io/biocontainers/strelka:2.9.10--h9ee0642_1' }"
input:
tuple val(meta), path(input), path(input_index), path (target_bed), path (target_bed_tbi)