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Rename workflows

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This commit is contained in:
drpatelh 2021-02-03 17:48:17 +00:00
parent ff6f0642d2
commit e71b3eaaa5
3 changed files with 6 additions and 4 deletions
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4
tests/software/bowtie/align/main.nf
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@ -5,7 +5,7 @@ nextflow.enable.dsl = 2
include { BOWTIE_BUILD } from '../../../../software/bowtie/build/main.nf' addParams( options: [:] ) include { BOWTIE_BUILD } from '../../../../software/bowtie/build/main.nf' addParams( options: [:] )
include { BOWTIE_ALIGN } from '../../../../software/bowtie/align/main.nf' addParams( options: [:] ) include { BOWTIE_ALIGN } from '../../../../software/bowtie/align/main.nf' addParams( options: [:] )
workflow test_bowtie_alignment_single_end { workflow test_bowtie_align_single_end {
def fasta = file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true) def fasta = file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true)
BOWTIE_BUILD ( fasta ) BOWTIE_BUILD ( fasta )
@ -16,7 +16,7 @@ workflow test_bowtie_alignment_single_end {
BOWTIE_ALIGN ( input, BOWTIE_BUILD.out.index ) BOWTIE_ALIGN ( input, BOWTIE_BUILD.out.index )
} }
workflow test_bowtie_alignment_paired_end { workflow test_bowtie_align_paired_end {
def fasta = file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true) def fasta = file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true)
BOWTIE_BUILD ( fasta ) BOWTIE_BUILD ( fasta )

4
tests/software/bowtie/align/test.yml
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@ -1,5 +1,5 @@
- name: bowtie align single-end - name: bowtie align single-end
command: nextflow run ./tests/software/bowtie/align -entry test_bowtie_alignment_single_end -c tests/config/nextflow.config command: nextflow run ./tests/software/bowtie/align -entry test_bowtie_align_single_end -c tests/config/nextflow.config
tags: tags:
- bowtie - bowtie
- bowtie_align - bowtie_align
@ -23,7 +23,7 @@
should_exist: true should_exist: true
- name: bowtie align paired-end - name: bowtie align paired-end
command: nextflow run ./tests/software/bowtie/align -entry test_bowtie_alignment_paired_end -c tests/config/nextflow.config command: nextflow run ./tests/software/bowtie/align -entry test_bowtie_align_single_end -c tests/config/nextflow.config
tags: tags:
- bowtie - bowtie
- bowtie_align - bowtie_align

2
tests/software/bowtie2/align/test.yml
View file

@ -2,6 +2,7 @@
command: nextflow run ./tests/software/bowtie2/align -entry test_bowtie2_align_single_end -c tests/config/nextflow.config command: nextflow run ./tests/software/bowtie2/align -entry test_bowtie2_align_single_end -c tests/config/nextflow.config
tags: tags:
- bowtie2 - bowtie2
- bowtie2_align
- bowtie2_align_single_end - bowtie2_align_single_end
files: files:
- path: output/bowtie2/bowtie2/NC_010473.1.bt2 - path: output/bowtie2/bowtie2/NC_010473.1.bt2
@ -25,6 +26,7 @@
command: nextflow run ./tests/software/bowtie2/align -entry test_bowtie2_align_paired_end -c tests/config/nextflow.config command: nextflow run ./tests/software/bowtie2/align -entry test_bowtie2_align_paired_end -c tests/config/nextflow.config
tags: tags:
- bowtie2 - bowtie2
- bowtie2_align
- bowtie2_align_paired_end - bowtie2_align_paired_end
files: files:
- path: output/bowtie2/bowtie2/NC_010473.1.bt2 - path: output/bowtie2/bowtie2/NC_010473.1.bt2