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Rename workflows
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commit
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3 changed files with 6 additions and 4 deletions
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@ -5,7 +5,7 @@ nextflow.enable.dsl = 2
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include { BOWTIE_BUILD } from '../../../../software/bowtie/build/main.nf' addParams( options: [:] )
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include { BOWTIE_ALIGN } from '../../../../software/bowtie/align/main.nf' addParams( options: [:] )
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workflow test_bowtie_alignment_single_end {
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workflow test_bowtie_align_single_end {
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def fasta = file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true)
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BOWTIE_BUILD ( fasta )
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@ -16,7 +16,7 @@ workflow test_bowtie_alignment_single_end {
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BOWTIE_ALIGN ( input, BOWTIE_BUILD.out.index )
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}
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workflow test_bowtie_alignment_paired_end {
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workflow test_bowtie_align_paired_end {
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def fasta = file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true)
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BOWTIE_BUILD ( fasta )
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@ -1,5 +1,5 @@
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- name: bowtie align single-end
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command: nextflow run ./tests/software/bowtie/align -entry test_bowtie_alignment_single_end -c tests/config/nextflow.config
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command: nextflow run ./tests/software/bowtie/align -entry test_bowtie_align_single_end -c tests/config/nextflow.config
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tags:
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- bowtie
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- bowtie_align
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@ -23,7 +23,7 @@
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should_exist: true
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- name: bowtie align paired-end
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command: nextflow run ./tests/software/bowtie/align -entry test_bowtie_alignment_paired_end -c tests/config/nextflow.config
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command: nextflow run ./tests/software/bowtie/align -entry test_bowtie_align_single_end -c tests/config/nextflow.config
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tags:
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- bowtie
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- bowtie_align
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@ -2,6 +2,7 @@
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command: nextflow run ./tests/software/bowtie2/align -entry test_bowtie2_align_single_end -c tests/config/nextflow.config
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tags:
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- bowtie2
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- bowtie2_align
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- bowtie2_align_single_end
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files:
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- path: output/bowtie2/bowtie2/NC_010473.1.bt2
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@ -25,6 +26,7 @@
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command: nextflow run ./tests/software/bowtie2/align -entry test_bowtie2_align_paired_end -c tests/config/nextflow.config
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tags:
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- bowtie2
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- bowtie2_align
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- bowtie2_align_paired_end
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files:
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- path: output/bowtie2/bowtie2/NC_010473.1.bt2
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