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Add git aware option to pytest commands (#1379)

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Mahesh Binzer-Panchal 2022-03-09 14:55:31 +01:00 committed by GitHub
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commit e79bcd7d4e
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2 changed files with 4 additions and 4 deletions
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6
.github/PULL_REQUEST_TEMPLATE.md vendored
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@ -27,6 +27,6 @@ Closes #XXX <!-- If this PR fixes an issue, please link it here! -->
- [ ] Add a resource `label` - [ ] Add a resource `label`
- [ ] Use BioConda and BioContainers if possible to fulfil software requirements. - [ ] Use BioConda and BioContainers if possible to fulfil software requirements.
- Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky: - Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
- [ ] `PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd` - [ ] `PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware`
- [ ] `PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd` - [ ] `PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware`
- [ ] `PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd` - [ ] `PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware`

2
.github/workflows/pytest-workflow.yml vendored
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@ -86,7 +86,7 @@ jobs:
# Test the module # Test the module
- name: Run pytest-workflow - name: Run pytest-workflow
# only use one thread for pytest-workflow to avoid race condition on conda cache. # only use one thread for pytest-workflow to avoid race condition on conda cache.
run: TMPDIR=~ PROFILE=${{ matrix.profile }} pytest --tag ${{ matrix.tags }} --symlink --kwdof run: TMPDIR=~ PROFILE=${{ matrix.profile }} pytest --tag ${{ matrix.tags }} --symlink --kwdof --git-aware
- name: Output log on failure - name: Output log on failure
if: failure() if: failure()