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new test.yml

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SusiJo 2022-05-31 14:35:42 +02:00
parent 3117b2973c
commit ea526051a4
1 changed files with 19 additions and 13 deletions
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tests/modules/gatk4/markduplicatesspark/test.yml
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@ -1,25 +1,31 @@
- name: gatk4 markduplicates test_gatk4_markduplicates_spark - name: gatk4 markduplicatesspark test_gatk4_markduplicates_spark
command: nextflow run tests/modules/gatk4/markduplicatesspark -entry test_gatk4_markduplicates_spark -c tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicatesspark/nextflow.config command: nextflow run ./tests/modules/gatk4/markduplicatesspark -entry test_gatk4_markduplicates_spark -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicatesspark/nextflow.config
tags: tags:
- gatk4 - gatk4
- gatk4/markduplicatesspark - gatk4/markduplicatesspark
files: files:
- path: output/gatk4/test.bai
md5sum: e9c125e82553209933883b4fe2b8d7c2
- path: output/gatk4/test.bam - path: output/gatk4/test.bam
md5sum: 2efd50b2e6b7fd9bdf242cd9e266cfa9 md5sum: dc1a09ac6371aab7c50d1a554baa06d3
- path: output/gatk4/test.metrics
- path: output/gatk4/versions.yml
- name: gatk4 markduplicates test_gatk4_markduplicates_spark_multiple_bams - name: gatk4 markduplicatesspark test_gatk4_markduplicates_spark_multiple_bams
command: nextflow run tests/modules/gatk4/markduplicatesspark -entry test_gatk4_markduplicates_spark_multiple_bams -c tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicatesspark/nextflow.config command: nextflow run ./tests/modules/gatk4/markduplicatesspark -entry test_gatk4_markduplicates_spark_multiple_bams -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicatesspark/nextflow.config
tags: tags:
- gatk4 - gatk4
- gatk4/markduplicatesspark - gatk4/markduplicatesspark
files: files:
- path: output/gatk4/test.bai
md5sum: bad71df9c876e72a5bc0a3e0fd755f92
- path: output/gatk4/test.bam - path: output/gatk4/test.bam
md5sum: 8187febc6108ffef7f907e89b9c091a4 md5sum: 898cb0a6616897d8ada90bab53bf0837
- name: gatk4 markduplicatesspark test_gatk4_markduplicates_spark_multiple_bams_metrics
command: nextflow run ./tests/modules/gatk4/markduplicatesspark -entry test_gatk4_markduplicates_spark_multiple_bams_metrics -c ./tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicatesspark/nextflow.config
tags:
- gatk4
- gatk4/markduplicatesspark
files:
- path: output/gatk4/test.bam
md5sum: 898cb0a6616897d8ada90bab53bf0837
- path: output/gatk4/test.metrics - path: output/gatk4/test.metrics
- path: output/gatk4/versions.yml contains: '[ ## METRICS CLASS org.broadinstitute.hellbender.utils.read.markduplicates.GATKDuplicationMetrics
LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED SECONDARY_OR_SUPPLEMENTARY_RDS UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATESPERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE
testN 0 2820 2 2 0 828 0 0.293617 3807
testT 0 2718 0 0 0 716 0 0.263429 4206 ]'