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Merge pull request #184 from MaxUlysse/master_fix_ci

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fix: update checksum or filename
This commit is contained in:
Harshil Patel 2021-02-17 10:54:38 +00:00 committed by GitHub
commit ed573db194
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9 changed files with 19 additions and 19 deletions
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2
tests/software/TOOL/SUBTOOL/test.yml
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@ -5,4 +5,4 @@
- tool_subtool
files:
- path: output/tool/test.bam
md5sum: a41bfadacd2eeef1d31e05c135cc4f4e
md5sum: e667c7caad0bc4b7ac383fd023c654fc

4
tests/software/bwa/mem/test.yml
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@ -6,7 +6,7 @@
- bwa_mem_single_end
files:
- path: output/bwa/test.bam
md5sum: 52e81e5bd523d0b27fe533b21a0d80f5
md5sum: 2bea94a4458cd1216214874b11c2e394
- name: bwa mem paired-end
command: nextflow run ./tests/software/bwa/mem -entry test_bwa_mem_paired_end -c tests/config/nextflow.config
@ -16,4 +16,4 @@
- bwa_mem_paired_end
files:
- path: output/bwa/test.bam
md5sum: 86d82fdb68ed384c656cfc62a253052f
md5sum: 2d952be81c7d2856712391b5d8556039

4
tests/software/bwamem2/mem/test.yml
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@ -6,7 +6,7 @@
- bwamem2_mem_single_end
files:
- path: output/bwamem2/test.bam
md5sum: 354acd3b7033a2d4ee69452df18c0a4d
md5sum: b8fceee111b3e23372c95ed765ac4401
- name: bwamem2 mem paired-end
command: nextflow run ./tests/software/bwamem2/mem -entry test_bwamem2_mem_paired_end -c tests/config/nextflow.config
@ -16,4 +16,4 @@
- bwamem2_mem_paired_end
files:
- path: output/bwamem2/test.bam
md5sum: 26187528a7bde13a2a9e9dd549b9bcd0
md5sum: 4b05c7e1b28e0835c647e890854897e4

6
tests/software/fastp/test.yml
View file

@ -5,9 +5,9 @@
- fastp_single_end
files:
- path: ./output/fastp/test.fastp.json
md5sum: b81d53bfa5c1553bed89f6475edcf437
md5sum: 8740a96898a850a3c2ce0081d9a259fb
- path: ./output/fastp/test.trim.fastq.gz
md5sum: 2f5516df477b123e3f78adb67effa3bc
md5sum: 63fea84c6907d2716aeb53fe890b288d
- path: ./output/fastp/test.fastp.log
- path: ./output/fastp/test.fastp.html
@ -19,7 +19,7 @@
files:
- path: ./output/fastp/test.fastp.html
- path: ./output/fastp/test.fastp.json
md5sum: 40db7fcbed478b0a96a1c5c1bb5f737b
md5sum: 7afba66526b1dd4cd3b1012809ba0327
- path: ./output/fastp/test.fastp.log
- path: ./output/fastp/test_1.trim.fastq.gz
md5sum: c8844c05194b50ae368e6825e997aa7f

2
tests/software/pangolin/test.yml
View file

@ -4,4 +4,4 @@
- pangolin
files:
- path: ./output/pangolin/test.pangolin.csv
md5sum: 097669de1843e27f4529d6db8bbed97b
md5sum: 43edd267815f6408b66961a0abf9ddd6

2
tests/software/samtools/sort/test.yml
View file

@ -5,4 +5,4 @@
- samtools_sort
files:
- path: output/samtools/test.bam
md5sum: a41bfadacd2eeef1d31e05c135cc4f4e
md5sum: e667c7caad0bc4b7ac383fd023c654fc

8
tests/software/star/align/test.yml
View file

@ -22,7 +22,7 @@
- path: output/star/star/exonInfo.tab
md5sum: 42eca6ebc2dc72d9d6e6b3acd3714343
- path: output/star/star/genomeParameters.txt
md5sum: ed47b8b034cae2fefcdb39321aea47cd
md5sum: 05e1041cbfb7f81686e17bc80b3ddcea
- path: output/star/star/sjdbInfo.txt
md5sum: 1082ab459363b3f2f7aabcef0979c1ed
- path: output/star/star/sjdbList.fromGTF.out.tab
@ -32,7 +32,7 @@
- path: output/star/star/transcriptInfo.tab
md5sum: 8fbe69abbbef4f89da3854873984dbac
- path: output/star/test.Aligned.out.bam
md5sum: d7f59c1728482e76a18e3f6eb9c66c25
md5sum: b7f113f12ff62e09d16fa0ace290d03e
- path: output/star/test.SJ.out.tab
md5sum: d41d8cd98f00b204e9800998ecf8427e
@ -60,7 +60,7 @@
- path: output/star/star/exonInfo.tab
md5sum: 42eca6ebc2dc72d9d6e6b3acd3714343
- path: output/star/star/genomeParameters.txt
md5sum: ed47b8b034cae2fefcdb39321aea47cd
md5sum: 05e1041cbfb7f81686e17bc80b3ddcea
- path: output/star/star/sjdbInfo.txt
md5sum: 1082ab459363b3f2f7aabcef0979c1ed
- path: output/star/star/sjdbList.fromGTF.out.tab
@ -70,6 +70,6 @@
- path: output/star/star/transcriptInfo.tab
md5sum: 8fbe69abbbef4f89da3854873984dbac
- path: output/star/test.Aligned.out.bam
md5sum: 5c52bcaa15e86914ad6b895638235166
md5sum: a1f92e8dbeb954b6b8d3d7cc6b9814fb
- path: output/star/test.SJ.out.tab
md5sum: d41d8cd98f00b204e9800998ecf8427e

2
tests/software/star/genomegenerate/test.yml
View file

@ -21,7 +21,7 @@
- path: output/star/star/exonInfo.tab
md5sum: 42eca6ebc2dc72d9d6e6b3acd3714343
- path: output/star/star/genomeParameters.txt
md5sum: ed47b8b034cae2fefcdb39321aea47cd
md5sum: 05e1041cbfb7f81686e17bc80b3ddcea
- path: output/star/star/sjdbInfo.txt
md5sum: 1082ab459363b3f2f7aabcef0979c1ed
- path: output/star/star/sjdbList.fromGTF.out.tab

8
tests/software/stringtie/test.yml
View file

@ -3,10 +3,10 @@
tags:
- stringtie
files:
- path: output/test_stringtie_forward/test.gene_abundance.txt
- path: output/test_stringtie_forward/test.gene.abundance.txt
md5sum: cea2e346f4e8137da13265b9b0a4c573
- path: output/test_stringtie_forward/test.transcripts.gtf
md5sum: f1b5baa8d94f86e499556a4ec419a75a
md5sum: 80a4155b459a124eac64b52cde7e8ad1
- path: output/test_stringtie_forward/test.coverage.gtf
md5sum: d41d8cd98f00b204e9800998ecf8427e
- path: output/test_stringtie_forward/test.ballgown/e_data.ctab
@ -25,10 +25,10 @@
tags:
- stringtie
files:
- path: output/test_stringtie_reverse/test.gene_abundance.txt
- path: output/test_stringtie_reverse/test.gene.abundance.txt
md5sum: cea2e346f4e8137da13265b9b0a4c573
- path: output/test_stringtie_reverse/test.transcripts.gtf
md5sum: cb0367e5f98f19fcc2043d248deb513c
md5sum: a69eabfc201112167f0844ffb80005c5
- path: output/test_stringtie_reverse/test.coverage.gtf
md5sum: d41d8cd98f00b204e9800998ecf8427e
- path: output/test_stringtie_reverse/test.ballgown/e_data.ctab