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leftover fixes from refactoring
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@ -40,7 +40,7 @@ process GATK4_GETPILEUPSUMMARIES {
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--variant $variants \\
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--output ${prefix}.pileups.table \\
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$reference_command \\
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$sites_command \\
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$interval_command \\
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--tmp-dir . \\
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$args
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