millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 11:08:17 +00:00
Code Issues Releases Packages Activity

Update checksum modules using human GTF (#900)

Browse source 
* update test yml star align

* update test yml stringtie merge

* update star genomegenerate yml

* update test yml rsem calculateexpression

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
This commit is contained in:
Gisela Gabernet 2021-10-27 00:09:04 +02:00 committed by GitHub
parent bd2baa1e7c
commit f47c27edfb
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
4 changed files with 42 additions and 15 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
tests/modules/rsem/calculateexpression/test.yml
View file

@ -1,8 +1,8 @@
- name: rsem calculateexpression test_rsem_calculateexpression - name: rsem calculateexpression test_rsem_calculateexpression
command: nextflow run tests/modules/rsem/calculateexpression -entry test_rsem_calculateexpression -c tests/config/nextflow.config command: nextflow run tests/modules/rsem/calculateexpression -entry test_rsem_calculateexpression -c tests/config/nextflow.config
tags: tags:
- rsem/calculateexpression
- rsem - rsem
- rsem/calculateexpression
files: files:
- path: output/index/rsem/Genome - path: output/index/rsem/Genome
md5sum: a654229fbca6071dcb6b01ce7df704da md5sum: a654229fbca6071dcb6b01ce7df704da

1
tests/modules/star/align/test.yml
View file

@ -81,6 +81,7 @@
md5sum: 0c3a5adb49d15e5feff81db8e29f2e36 md5sum: 0c3a5adb49d15e5feff81db8e29f2e36
- path: output/star/test.Aligned.out.bam - path: output/star/test.Aligned.out.bam
md5sum: 38d08f0b944a2a1b981a250d675aa0d9 md5sum: 38d08f0b944a2a1b981a250d675aa0d9
- path: output/star/test.Log.final.out
- path: output/star/test.Log.out - path: output/star/test.Log.out
- path: output/star/test.Log.progress.out - path: output/star/test.Log.progress.out
- path: output/star/test.SJ.out.tab - path: output/star/test.SJ.out.tab

2
tests/modules/star/genomegenerate/test.yml
View file

@ -1,8 +1,8 @@
- name: star genomegenerate test_star_genomegenerate - name: star genomegenerate test_star_genomegenerate
command: nextflow run tests/modules/star/genomegenerate -entry test_star_genomegenerate -c tests/config/nextflow.config command: nextflow run tests/modules/star/genomegenerate -entry test_star_genomegenerate -c tests/config/nextflow.config
tags: tags:
- star/genomegenerate
- star - star
- star/genomegenerate
files: files:
- path: output/star/star/Genome - path: output/star/star/Genome
md5sum: a654229fbca6071dcb6b01ce7df704da md5sum: a654229fbca6071dcb6b01ce7df704da

52
tests/modules/stringtie/merge/test.yml
View file

@ -1,23 +1,49 @@
- name: stringtie merge forward-strand - name: stringtie merge forward-strand
command: nextflow run ./tests/modules/stringtie/merge/ -entry test_stringtie_forward_merge -c tests/config/nextflow.config command: nextflow run tests/modules/stringtie/merge -entry test_stringtie_forward_merge -c tests/config/nextflow.config
tags: tags:
- stringtie - stringtie
- stringtie/merge - stringtie/merge
files: files:
- path: ./output/stringtie/stringtie.merged.gtf - path: output/stringtie/stringtie.merged.gtf
contains: md5sum: 9fab7049ef2eafdea246fc787d1def40
- 'stringtie' - path: output/stringtie/test.ballgown/e2t.ctab
- 'merge' md5sum: 9ae42e056c955a88a883e5e917840d77
- 'chr22' - path: output/stringtie/test.ballgown/e_data.ctab
md5sum: adbedee7b2f84c70362ad6dfa57442b7
- path: output/stringtie/test.ballgown/i2t.ctab
md5sum: 658131af118cfb416939044fdb5411de
- path: output/stringtie/test.ballgown/i_data.ctab
md5sum: f01d94a7d0dcfad3bfab18ed50dad16c
- path: output/stringtie/test.ballgown/t_data.ctab
md5sum: 92a98902784e7406ffe054d2adbabc7c
- path: output/stringtie/test.coverage.gtf
md5sum: d41d8cd98f00b204e9800998ecf8427e
- path: output/stringtie/test.gene.abundance.txt
md5sum: 9708811bcefe0f6384293d6f419f3250
- path: output/stringtie/test.transcripts.gtf
md5sum: 0e42709bfe30c2c7f2574ba664f5fa9f
- name: stringtie merge reverse-strand - name: stringtie merge test_stringtie_reverse_merge
command: nextflow run ./tests/modules/stringtie/merge/ -entry test_stringtie_reverse_merge -c tests/config/nextflow.config command: nextflow run tests/modules/stringtie/merge -entry test_stringtie_reverse_merge -c tests/config/nextflow.config
tags: tags:
- stringtie - stringtie
- stringtie/merge - stringtie/merge
files: files:
- path: ./output/stringtie/stringtie.merged.gtf - path: output/stringtie/stringtie.merged.gtf
contains: md5sum: afc461bb3cbc368f268a7a45c1b54497
- 'stringtie' - path: output/stringtie/test.ballgown/e2t.ctab
- 'merge' md5sum: 9ae42e056c955a88a883e5e917840d77
- 'chr22' - path: output/stringtie/test.ballgown/e_data.ctab
md5sum: fd8496d3957ade3b2c0853155f9a67da
- path: output/stringtie/test.ballgown/i2t.ctab
md5sum: 658131af118cfb416939044fdb5411de
- path: output/stringtie/test.ballgown/i_data.ctab
md5sum: f01d94a7d0dcfad3bfab18ed50dad16c
- path: output/stringtie/test.ballgown/t_data.ctab
md5sum: 92a98902784e7406ffe054d2adbabc7c
- path: output/stringtie/test.coverage.gtf
md5sum: d41d8cd98f00b204e9800998ecf8427e
- path: output/stringtie/test.gene.abundance.txt
md5sum: 94b85145d60ab1b80a7f0f6cf08418b0
- path: output/stringtie/test.transcripts.gtf
md5sum: 3196e3d50fd461aae6408e0a70acae68