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f47c27edfb
* update test yml star align * update test yml stringtie merge * update star genomegenerate yml * update test yml rsem calculateexpression Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
49 lines
2.2 KiB
YAML
49 lines
2.2 KiB
YAML
- name: stringtie merge forward-strand
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command: nextflow run tests/modules/stringtie/merge -entry test_stringtie_forward_merge -c tests/config/nextflow.config
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tags:
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- stringtie
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- stringtie/merge
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files:
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- path: output/stringtie/stringtie.merged.gtf
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md5sum: 9fab7049ef2eafdea246fc787d1def40
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- path: output/stringtie/test.ballgown/e2t.ctab
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md5sum: 9ae42e056c955a88a883e5e917840d77
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- path: output/stringtie/test.ballgown/e_data.ctab
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md5sum: adbedee7b2f84c70362ad6dfa57442b7
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- path: output/stringtie/test.ballgown/i2t.ctab
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md5sum: 658131af118cfb416939044fdb5411de
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- path: output/stringtie/test.ballgown/i_data.ctab
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md5sum: f01d94a7d0dcfad3bfab18ed50dad16c
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- path: output/stringtie/test.ballgown/t_data.ctab
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md5sum: 92a98902784e7406ffe054d2adbabc7c
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- path: output/stringtie/test.coverage.gtf
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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- path: output/stringtie/test.gene.abundance.txt
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md5sum: 9708811bcefe0f6384293d6f419f3250
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- path: output/stringtie/test.transcripts.gtf
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md5sum: 0e42709bfe30c2c7f2574ba664f5fa9f
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- name: stringtie merge test_stringtie_reverse_merge
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command: nextflow run tests/modules/stringtie/merge -entry test_stringtie_reverse_merge -c tests/config/nextflow.config
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tags:
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- stringtie
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- stringtie/merge
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files:
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- path: output/stringtie/stringtie.merged.gtf
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md5sum: afc461bb3cbc368f268a7a45c1b54497
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- path: output/stringtie/test.ballgown/e2t.ctab
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md5sum: 9ae42e056c955a88a883e5e917840d77
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- path: output/stringtie/test.ballgown/e_data.ctab
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md5sum: fd8496d3957ade3b2c0853155f9a67da
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- path: output/stringtie/test.ballgown/i2t.ctab
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md5sum: 658131af118cfb416939044fdb5411de
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- path: output/stringtie/test.ballgown/i_data.ctab
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md5sum: f01d94a7d0dcfad3bfab18ed50dad16c
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- path: output/stringtie/test.ballgown/t_data.ctab
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md5sum: 92a98902784e7406ffe054d2adbabc7c
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- path: output/stringtie/test.coverage.gtf
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md5sum: d41d8cd98f00b204e9800998ecf8427e
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- path: output/stringtie/test.gene.abundance.txt
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md5sum: 94b85145d60ab1b80a7f0f6cf08418b0
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- path: output/stringtie/test.transcripts.gtf
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md5sum: 3196e3d50fd461aae6408e0a70acae68
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