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Mahesh Binzer-Panchal 2022-05-04 11:54:51 +00:00
parent 73a8df9522
commit f65abe1e9a
1 changed files with 70 additions and 70 deletions
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140
tests/modules/busco/test.yml
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@ -5,32 +5,32 @@
files: files:
- path: output/busco/short_summary.specific.bacteria_odb10.genome.fna.json - path: output/busco/short_summary.specific.bacteria_odb10.genome.fna.json
contains: contains:
- 'one_line_summary' - "one_line_summary"
- 'input_file' - "input_file"
- 'mode' - "mode"
- 'dataset' - "dataset"
- path: output/busco/short_summary.specific.bacteria_odb10.genome.fna.txt - path: output/busco/short_summary.specific.bacteria_odb10.genome.fna.txt
contains: contains:
- 'BUSCO version' - "BUSCO version"
- 'The lineage dataset is' - "The lineage dataset is"
- 'BUSCO was run in mode' - "BUSCO was run in mode"
- 'Complete BUSCOs' - "Complete BUSCOs"
- 'Missing BUSCOs' - "Missing BUSCOs"
- 'Dependencies and versions' - "Dependencies and versions"
- path: output/busco/short_summary.specific.bacteroidetes_odb10.genome.fna.json - path: output/busco/short_summary.specific.bacteroidetes_odb10.genome.fna.json
contains: contains:
- 'one_line_summary' - "one_line_summary"
- 'input_file' - "input_file"
- 'mode' - "mode"
- 'dataset' - "dataset"
- path: output/busco/short_summary.specific.bacteroidetes_odb10.genome.fna.txt - path: output/busco/short_summary.specific.bacteroidetes_odb10.genome.fna.txt
contains: contains:
- 'BUSCO version' - "BUSCO version"
- 'The lineage dataset is' - "The lineage dataset is"
- 'BUSCO was run in mode' - "BUSCO was run in mode"
- 'Complete BUSCOs' - "Complete BUSCOs"
- 'Missing BUSCOs' - "Missing BUSCOs"
- 'Dependencies and versions' - "Dependencies and versions"
- path: output/busco/test-bacteria_odb10-busco.batch_summary.txt - path: output/busco/test-bacteria_odb10-busco.batch_summary.txt
md5sum: e50690742e9ae6abdd2bf99334ff9e12 md5sum: e50690742e9ae6abdd2bf99334ff9e12
- path: output/busco/test-bacteroidetes_odb10-busco.batch_summary.txt - path: output/busco/test-bacteroidetes_odb10-busco.batch_summary.txt
@ -45,32 +45,32 @@
files: files:
- path: output/busco/short_summary.specific.bacteria_odb10.genome.fasta.json - path: output/busco/short_summary.specific.bacteria_odb10.genome.fasta.json
contains: contains:
- 'one_line_summary' - "one_line_summary"
- 'input_file' - "input_file"
- 'mode' - "mode"
- 'dataset' - "dataset"
- path: output/busco/short_summary.specific.bacteria_odb10.genome.fasta.txt - path: output/busco/short_summary.specific.bacteria_odb10.genome.fasta.txt
contains: contains:
- 'BUSCO version' - "BUSCO version"
- 'The lineage dataset is' - "The lineage dataset is"
- 'BUSCO was run in mode' - "BUSCO was run in mode"
- 'Complete BUSCOs' - "Complete BUSCOs"
- 'Missing BUSCOs' - "Missing BUSCOs"
- 'Dependencies and versions' - "Dependencies and versions"
- path: output/busco/short_summary.specific.bacteria_odb10.genome.fna.json - path: output/busco/short_summary.specific.bacteria_odb10.genome.fna.json
contains: contains:
- 'one_line_summary' - "one_line_summary"
- 'input_file' - "input_file"
- 'mode' - "mode"
- 'dataset' - "dataset"
- path: output/busco/short_summary.specific.bacteria_odb10.genome.fna.txt - path: output/busco/short_summary.specific.bacteria_odb10.genome.fna.txt
contains: contains:
- 'BUSCO version' - "BUSCO version"
- 'The lineage dataset is' - "The lineage dataset is"
- 'BUSCO was run in mode' - "BUSCO was run in mode"
- 'Complete BUSCOs' - "Complete BUSCOs"
- 'Missing BUSCOs' - "Missing BUSCOs"
- 'Dependencies and versions' - "Dependencies and versions"
- path: output/busco/test-bacteria_odb10-busco.batch_summary.txt - path: output/busco/test-bacteria_odb10-busco.batch_summary.txt
md5sum: 5360dfe83bec1f5741ee115e53e6b517 md5sum: 5360dfe83bec1f5741ee115e53e6b517
- path: output/busco/versions.yml - path: output/busco/versions.yml
@ -83,18 +83,18 @@
files: files:
- path: output/busco/short_summary.specific.eukaryota_odb10.genome.fasta.json - path: output/busco/short_summary.specific.eukaryota_odb10.genome.fasta.json
contains: contains:
- 'one_line_summary' - "one_line_summary"
- 'input_file' - "input_file"
- 'mode' - "mode"
- 'dataset' - "dataset"
- path: output/busco/short_summary.specific.eukaryota_odb10.genome.fasta.txt - path: output/busco/short_summary.specific.eukaryota_odb10.genome.fasta.txt
contains: contains:
- 'BUSCO version' - "BUSCO version"
- 'The lineage dataset is' - "The lineage dataset is"
- 'BUSCO was run in mode' - "BUSCO was run in mode"
- 'Complete BUSCOs' - "Complete BUSCOs"
- 'Missing BUSCOs' - "Missing BUSCOs"
- 'Dependencies and versions' - "Dependencies and versions"
- path: output/busco/test-eukaryota_odb10-busco.batch_summary.txt - path: output/busco/test-eukaryota_odb10-busco.batch_summary.txt
md5sum: a70806f99ba5706d7353d3353b3f1d2b md5sum: a70806f99ba5706d7353d3353b3f1d2b
- path: output/busco/versions.yml - path: output/busco/versions.yml
@ -117,18 +117,18 @@
files: files:
- path: output/busco/short_summary.specific.bacteria_odb10.proteome.fasta.json - path: output/busco/short_summary.specific.bacteria_odb10.proteome.fasta.json
contains: contains:
- 'one_line_summary' - "one_line_summary"
- 'input_file' - "input_file"
- 'mode' - "mode"
- 'dataset' - "dataset"
- path: output/busco/short_summary.specific.bacteria_odb10.proteome.fasta.txt - path: output/busco/short_summary.specific.bacteria_odb10.proteome.fasta.txt
contains: contains:
- 'BUSCO version' - "BUSCO version"
- 'The lineage dataset is' - "The lineage dataset is"
- 'BUSCO was run in mode' - "BUSCO was run in mode"
- 'Complete BUSCOs' - "Complete BUSCOs"
- 'Missing BUSCOs' - "Missing BUSCOs"
- 'Dependencies and versions' - "Dependencies and versions"
- path: output/busco/test-bacteria_odb10-busco.batch_summary.txt - path: output/busco/test-bacteria_odb10-busco.batch_summary.txt
md5sum: fd3b4e30ce74d1fcb95d6286d6e2049f md5sum: fd3b4e30ce74d1fcb95d6286d6e2049f
- path: output/busco/versions.yml - path: output/busco/versions.yml
@ -141,18 +141,18 @@
files: files:
- path: output/busco/short_summary.specific.bacteria_odb10.test1.contigs.fa.json - path: output/busco/short_summary.specific.bacteria_odb10.test1.contigs.fa.json
contains: contains:
- 'one_line_summary' - "one_line_summary"
- 'input_file' - "input_file"
- 'mode' - "mode"
- 'dataset' - "dataset"
- path: output/busco/short_summary.specific.bacteria_odb10.test1.contigs.fa.txt - path: output/busco/short_summary.specific.bacteria_odb10.test1.contigs.fa.txt
contains: contains:
- 'BUSCO version' - "BUSCO version"
- 'The lineage dataset is' - "The lineage dataset is"
- 'BUSCO was run in mode' - "BUSCO was run in mode"
- 'Complete BUSCOs' - "Complete BUSCOs"
- 'Missing BUSCOs' - "Missing BUSCOs"
- 'Dependencies and versions' - "Dependencies and versions"
- path: output/busco/test-bacteria_odb10-busco.batch_summary.txt - path: output/busco/test-bacteria_odb10-busco.batch_summary.txt
md5sum: 9a176cafe66ac0adca89dc34ad2be13f md5sum: 9a176cafe66ac0adca89dc34ad2be13f
- path: output/busco/versions.yml - path: output/busco/versions.yml