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style: Fix indent on workflows

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This commit is contained in:
Edmund Miller 2020-12-09 09:56:11 -06:00
parent 79a0ce79ab
commit f994d55c18
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3 changed files with 44 additions and 46 deletions
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58
.github/workflows/bwa_index.yml vendored
View file

@ -1,36 +1,36 @@
name: bwa_index name: bwa_index
on: on:
push: push:
paths: paths:
- software/bwa/index/** - software/bwa/index/**
- .github/workflows/bwa_index.yml - .github/workflows/software/bwa_index.yml
- tests/software/bwa/** - tests/software/bwa/**
pull_request: pull_request:
paths: paths:
- software/bwa/index/** - software/bwa/index/**
- .github/workflows/bwa_index.yml - .github/workflows/software/bwa_index.yml
- tests/software/bwa/** - tests/software/bwa/**
jobs: jobs:
ci_test: ci_test:
runs-on: ubuntu-latest runs-on: ubuntu-latest
env: env:
NXF_ANSI_LOG: false NXF_ANSI_LOG: false
steps: steps:
- uses: actions/checkout@v2 - uses: actions/checkout@v2
- name: Install Nextflow - name: Install Nextflow
run: | run: |
export NXF_VER="20.07.1" export NXF_VER="20.07.1"
wget -qO- get.nextflow.io | bash wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/ sudo mv nextflow /usr/local/bin/
- name: Set up Python - name: Set up Python
uses: actions/setup-python@v2 uses: actions/setup-python@v2
with: with:
python-version: "3.x" python-version: "3.x"
- name: Install dependencies - name: Install dependencies
run: python -m pip install --upgrade pip pytest-workflow run: python -m pip install --upgrade pip pytest-workflow
# Test the module # Test the module
- run: pytest --tag bwa_index --symlink --wt 2 - run: pytest --tag bwa_index --symlink --wt 2

30
.github/workflows/multiqc.yml vendored
View file

@ -17,22 +17,20 @@ jobs:
env: env:
NXF_ANSI_LOG: false NXF_ANSI_LOG: false
steps: steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v2 - name: Install Nextflow
run: |
export NXF_VER="20.07.1"
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Install Nextflow - name: Set up Python
run: | uses: actions/setup-python@v2
export NXF_VER="20.07.1" with:
wget -qO- get.nextflow.io | bash python-version: "3.x"
sudo mv nextflow /usr/local/bin/ - name: Install dependencies
run: python -m pip install --upgrade pip pytest-workflow
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: "3.x"
- name: Install dependencies
run: python -m pip install --upgrade pip pytest-workflow
# Test the module
- run: pytest --tag multiqc --symlink --wt 2
# Test the module
- run: pytest --tag multiqc --symlink --wt 2

2
.github/workflows/picard_collectmultiplemetrics.yml vendored
View file

@ -1,4 +1,4 @@
name: picard_collectmultiplemetrics.yml name: picard_collectmultiplemetrics
on: on:
push: push:
paths: paths: