millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 19:18:17 +00:00
Code Issues Releases Packages Activity

Merge pull request #1692 from SusiJo/cnvkit/reference

Browse source 
Changed tag of module
This commit is contained in:
Harshil Patel 2022-05-24 12:49:15 +01:00 committed by GitHub
commit f9aa1e0bdb
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 6 additions and 7 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

13
modules/cnvkit/reference/main.nf
View file

@ -1,5 +1,5 @@
process CNVKIT_REFERENCE { process CNVKIT_REFERENCE {
tag "$reference" tag "$fasta"
label 'process_low' label 'process_low'
conda (params.enable_conda ? "bioconda::cnvkit=0.9.9" : null) conda (params.enable_conda ? "bioconda::cnvkit=0.9.9" : null)
@ -8,20 +8,19 @@ process CNVKIT_REFERENCE {
'quay.io/biocontainers/cnvkit:0.9.9--pyhdfd78af_0' }" 'quay.io/biocontainers/cnvkit:0.9.9--pyhdfd78af_0' }"
input: input:
path fasta path fasta
path targets path targets
path antitargets path antitargets
output: output:
path("*.cnn") , emit: cnn path "*.cnn" , emit: cnn
path "versions.yml" , emit: versions path "versions.yml", emit: versions
when: when:
task.ext.when == null || task.ext.when task.ext.when == null || task.ext.when
script: script:
def args = task.ext.args ?: '' def args = task.ext.args ?: ''
""" """
cnvkit.py \\ cnvkit.py \\
reference \\ reference \\