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Add -with-docker

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This commit is contained in:
drpatelh 2020-08-07 09:44:16 +01:00
parent 111b1505fa
commit fab020461b
2 changed files with 3 additions and 3 deletions
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2
.github/workflows/fastqc.yml vendored
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@ -27,4 +27,4 @@ jobs:
sudo mv nextflow /usr/local/bin/ sudo mv nextflow /usr/local/bin/
# Test the module # Test the module
- run: nextflow run ./software/fastqc/test/ - run: nextflow run ./software/fastqc/test/ -with-docker

4
software/fastqc/test/main.nf
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@ -14,7 +14,7 @@ include { FASTQC } from '../main.nf'
workflow test_single_end { workflow test_single_end {
def input = [] def input = []
input = [ [ id:'test', single_end:true ], input = [ [ id:'test', single_end:true ], // meta map
[ file("${baseDir}/input/test_single_end.fastq.gz", checkIfExists: true) ] ] [ file("${baseDir}/input/test_single_end.fastq.gz", checkIfExists: true) ] ]
FASTQC ( input, [ publish_dir:'test_single_end' ] ) FASTQC ( input, [ publish_dir:'test_single_end' ] )
@ -26,7 +26,7 @@ workflow test_single_end {
workflow test_paired_end { workflow test_paired_end {
def input = [] def input = []
input = [ [ id:'test', single_end:false ], input = [ [ id:'test', single_end:false ], // meta map
[ file("${baseDir}/input/test_R1.fastq.gz", checkIfExists: true), [ file("${baseDir}/input/test_R1.fastq.gz", checkIfExists: true),
file("${baseDir}/input/test_R2.fastq.gz", checkIfExists: true) ] ] file("${baseDir}/input/test_R2.fastq.gz", checkIfExists: true) ] ]