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Update modules/bowtie2/align/main.nf

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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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Matthias De Smet 2022-05-11 13:57:11 +02:00 committed by GitHub
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modules/bowtie2/align/main.nf
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@ -48,7 +48,7 @@ process BOWTIE2_ALIGN {
-x \$INDEX \\ -x \$INDEX \\
${reads_args} \\ ${reads_args} \\
--threads $task.cpus \\ --threads $task.cpus \\
${unaligned} \\ $unaligned \\
$args \\ $args \\
2> ${prefix}.bowtie2.log \\ 2> ${prefix}.bowtie2.log \\
| ${samtools} | ${samtools}