2193 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
drpatelh	d9443043ab	Add white background logo for repo	2021-02-08 11:22:03 +00:00
Harshil Patel	d29ef5c52c	Merge pull request #152 from drpatelh/docs ... Update template module and add more docs for testing and finding containers	2021-02-08 10:31:00 +00:00
JoseEspinosa	5071bf5914	Merge remote-tracking branch 'upstream/master' into bcftools_viralrecon	2021-02-08 10:45:57 +01:00
drpatelh	c9cfdd31f3	Fix barfing linters	2021-02-08 00:57:06 +00:00
drpatelh	c92fe8701a	Add docs about docs	2021-02-08 00:53:32 +00:00
drpatelh	41dfaf2a19	Use Nextflow comments	2021-02-08 00:44:45 +00:00
drpatelh	56752b90f5	Fix indents	2021-02-08 00:40:36 +00:00
drpatelh	a8efd112b9	Add docs about finding and adding containers	2021-02-08 00:35:50 +00:00
drpatelh	d4b278eb65	Update docs	2021-02-08 00:01:48 +00:00
drpatelh	9cb958ca25	Update commands for pytest	2021-02-07 23:50:21 +00:00
drpatelh	07f62a76c5	Re-word CI tests	2021-02-07 23:40:26 +00:00
drpatelh	6bbb71a022	Update link to tests template	2021-02-07 23:26:54 +00:00
drpatelh	eeb496cf5c	Fix filters	2021-02-07 23:23:08 +00:00
drpatelh	83a50d8ae0	Rename SOFTWARE_TOOL to TOOL_SUBTOOL	2021-02-07 23:20:53 +00:00
Harshil Patel	dcabde6b85	Merge pull request #139 from nf-core/testing-docs ... Add documentation for Testing	2021-02-07 22:35:01 +00:00
drpatelh	a34d74188d	Really fix Editor Config	2021-02-07 21:49:20 +00:00
drpatelh	ef0a984cc0	Fix Editor config tests	2021-02-07 21:44:45 +00:00
drpatelh	418bd64e80	Test module with Conda	2021-02-07 21:33:42 +00:00
drpatelh	5779b180da	Fix bedtools sort module	2021-02-07 21:32:43 +00:00
drpatelh	f3b5af4ed5	Fix bedtools slip module	2021-02-07 21:32:20 +00:00
drpatelh	38964ecfc0	Fix bedtools intersect module	2021-02-07 21:32:01 +00:00
drpatelh	a37b116186	Fix bedtools merge module	2021-02-07 21:31:39 +00:00
drpatelh	4564ef0e54	Fix bedtools genomecov module	2021-02-07 21:31:21 +00:00
drpatelh	a0c08e0c06	Fix bedtools complement module	2021-02-07 21:31:02 +00:00
drpatelh	a9102c329c	Fix bedtools complement module	2021-02-07 20:55:12 +00:00
Harshil Patel	e4adb8ab53	Merge pull request #79 from Functional-Genomics-Lab/bedtools-general ... Bring bedtools up to speed	2021-02-07 20:49:17 +00:00
Harshil Patel	0393d39105	Update tests/software/bedtools/complement/main.nf	2021-02-07 20:35:51 +00:00
Harshil Patel	5269c1ec60	Update tests/software/bedtools/intersect/main.nf	2021-02-07 20:35:12 +00:00
Harshil Patel	8841af1267	Update tests/software/bedtools/merge/main.nf	2021-02-07 20:34:30 +00:00
Harshil Patel	b068f2fc53	Update tests/software/bedtools/sort/main.nf	2021-02-07 20:33:02 +00:00
Harshil Patel	b260192942	Merge pull request #149 from heuermh/minimap2 ... Add minimap2 align module	2021-02-07 16:37:26 +00:00
Michael L Heuer	35ed09b06e	Fix CI test failure	2021-02-05 11:41:36 -06:00
Michael L Heuer	6b873d7d33	Remove single_end if/else	2021-02-05 11:35:11 -06:00
Edmund Miller	e51d0bdf5e	Apply suggestions from code review ... Co-authored-by: Kevin Menden <kevin.menden@t-online.de>	2021-02-05 09:26:45 -06:00
Harshil Patel	31520fce97	Update software/minimap2/align/main.nf	2021-02-05 10:45:34 +00:00
drpatelh	137d00b523	Fix tests	2021-02-05 10:44:08 +00:00
drpatelh	81ae0089bc	Fix merge conflicts	2021-02-05 10:06:39 +00:00
Kevin Menden	17dd0415f2	Merge pull request #146 from heuermh/bandage ... Add bandage image module	2021-02-05 08:00:44 +01:00
Edmund Miller	f065476d36	docs: Add testing documentation	2021-02-04 16:00:31 -06:00
Michael L Heuer	50bebac136	Remove pairwise test	2021-02-04 15:22:12 -06:00
Michael L Heuer	061b13bf25	Fix md5 --> md5sum	2021-02-04 13:48:56 -06:00
Michael L Heuer	bbc8c725a2	Fix lint errors	2021-02-04 13:45:39 -06:00
Michael L Heuer	d5f2f5e32d	Add minimap2 align module	2021-02-04 13:42:08 -06:00
Michael L Heuer	37a9f6f456	Address review comments	2021-02-04 12:10:54 -06:00
Kevin Menden	089af956fb	Merge pull request #148 from nf-core/fix-artifact-path ... ci: Fix artifact path	2021-02-04 15:48:52 +01:00
Edmund Miller	05c09429a3	ci: Fix artifact path ... Had to change it for singularity	2021-02-04 08:45:34 -06:00
Harshil Patel	08d8443510	Merge pull request #143 from nf-core/ci-fixes ... Get Singularity CI tests working	2021-02-04 11:28:49 +00:00
Harshil Patel	5aa920eb53	Update tests/software/bowtie/align/test.yml	2021-02-04 10:19:28 +00:00
Harshil Patel	68f9a0b711	Update tests/software/bowtie/build/test.yml	2021-02-04 10:08:01 +00:00
Harshil Patel	eb45368a35	Update tests/software/bowtie2/build/test.yml	2021-02-04 10:07:44 +00:00