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Author SHA1 Message Date
Candice
7cc1319801 luslab-umitools | Renamed dedup.nf to main.nf 2020-06-01 15:18:49 +02:00
Candice
e00b7bd91e luslab-umitools | Added parameter overriding function to umi_tools 2020-06-01 15:02:21 +02:00
Candice
549f81e4ea luslab-umitools | Created a Dockerfile for umi_tools module 2020-06-01 14:52:43 +02:00
Candice
bfdccfe1b9 luslab-umitools | Initialized test.nf 2020-06-01 14:40:50 +02:00
Candice
ab2d819df3 luslab-umitools | Renamed umi-tools.nf to dedup.nf 2020-06-01 14:40:50 +02:00
Candice
ff243acf63 luslab-umitools | Created umitool.nf file in the dedup folder 2020-06-01 14:40:50 +02:00
Candice
baa5805350 luslab-umitools | Created test.nf and test folder in umi_tools/dedup 2020-06-01 14:40:50 +02:00
FelixKrueger
a2104ca3b9 Added HISAT2 module and test workflow 2020-03-20 11:04:25 +00:00
FelixKrueger
a526551300 Added Bowtie2 module and test workflow 2020-03-19 18:13:15 +00:00
FelixKrueger
974c6168d6 Added short description of MultiQC 2020-03-18 10:06:38 +00:00
FelixKrueger
223077e5a6 MultiQC module and test workflow 2020-03-17 21:46:21 +00:00
FelixKrueger
6208ac9799 Added functional Trim Galore module 2020-03-16 17:49:39 +00:00
Alexander Peltzer
9dee710b04
Merge pull request #25 from piotr-faba-ardigen/add_cutadapt_tool 
Add cutadapt tool
 2020-03-16 18:46:00 +01:00
Harshil Patel
7738dbe4df
Merge pull request #26 from nf-core/readme-update-modules 
Propose module organization
 2020-03-16 14:49:24 +00:00
Harshil Patel
5e71d61f27
Update README.md 2020-03-16 14:47:20 +00:00
Harshil Patel
d553406fa5
Update README.md 2020-03-16 14:47:11 +00:00
Harshil Patel
300e89c4dc
Update README.md 2020-03-16 14:47:03 +00:00
Alexander Peltzer
95d57bcef2
Apply suggestions from code review 
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
 2020-03-16 15:42:52 +01:00
FelixKrueger
f8916eb9b5 FastQC module is working and now accepting arguments 2020-03-16 14:17:38 +00:00
Alexander Peltzer
771e53625b
Update README.md 2020-03-16 14:42:22 +01:00
Alexander Peltzer
05b4bbe8a1
Update README.md 2020-03-16 14:39:27 +01:00
Alexander Peltzer
f091e174c0
Update README.md 2020-03-16 14:37:07 +01:00
Alexander Peltzer
9753e803e0
Update README.md 2020-03-16 14:27:08 +01:00
Alexander Peltzer
4303ec700c
Propose module organization 
See above changes to readme :_)
 2020-03-16 14:06:03 +01:00
FelixKrueger
0ceb45068e FastQ Screen works with E coli paired-end test file 2020-03-10 22:14:25 +00:00
FelixKrueger
d9a3b02b00 Updated yaml description 2020-03-10 14:13:36 +00:00
JoseEspinosa
787bf44c62 Name was fixed to tcoffee instead of FastQC (used as template) 2020-03-06 16:35:02 +01:00
Piotr Faba
6fd86ad9e5 2 tests 2020-03-06 14:56:33 +00:00
Piotr Faba
fa134a1196 fix path error 2020-03-06 14:54:26 +00:00
Piotr Faba
2646e55e2b get test working 2020-03-06 14:50:29 +00:00
Piotr Faba
660be04708 fix test 2020-03-06 14:41:37 +00:00
Piotr Faba
36cad50593 test submodules checkout 2020-03-06 14:38:49 +00:00
Piotr Faba
977a9b3ee8 test fix 2020-03-06 14:34:34 +00:00
Phil Ewels
c8ceddfe77 Tidying, add samtools and trim_galore 2020-03-06 14:33:48 +00:00
Piotr Faba
f33dd2d2e9 add ci test 2020-03-06 14:31:44 +00:00
Piotr Faba
c90474202c update meta 2020-03-06 14:23:32 +00:00
Phil Ewels
198e9a85eb FastQC: add dockerfile and environment.yml 2020-03-06 14:04:18 +00:00
Piotr Faba
1c941ef8d6 Update test-data commit and references 2020-03-06 13:59:14 +00:00
Piotr Faba
490eca706c single and paired end supported 2020-03-06 13:23:12 +00:00
FelixKrueger
a6f7296e22 Initial commit 2020-03-06 13:21:17 +00:00
Phil Ewels
b3cc751e78 Build tool docker images: first attempt 2020-03-06 11:54:09 +00:00
JoseEspinosa
bcc89c27ca Fixing command to run nxf 2020-03-06 12:47:55 +01:00
JoseEspinosa
7fe0a936f6 Fixing another typo on the yml for CI github actions 2020-03-06 12:41:07 +01:00
JoseEspinosa
36c0c56fdd Fixing typo on the yml for CI github actions 2020-03-06 12:38:21 +01:00
JoseEspinosa
5f9cf40f5a Changing publishDir to take params.outdir and modifying yml for github actions 2020-03-06 12:23:23 +01:00
JoseEspinosa
5de4c86bac symlink working? (github actions error) 2020-03-06 12:02:40 +01:00
Piotr Faba
88bc7dcdd8 the module is working in test 2020-03-06 10:51:46 +00:00
JoseEspinosa
4312ddc1fe Is the file in the submodule? (github actions error) 2020-03-06 11:46:37 +01:00
JoseEspinosa
c8c2d0e659 Trying to fix git actions 2020-03-05 17:48:10 +01:00
JoseEspinosa
5bb7d9c497 Updating submodule with tcoffee dataset 2020-03-05 17:39:00 +01:00