Commit graph

2874 commits

Author SHA1 Message Date
Nicolas Vannieuwkerke
37338ecee3 Finished the module 2022-05-04 14:00:02 +02:00
Mahesh Binzer-Panchal
f65abe1e9a Prettier 2022-05-04 11:54:51 +00:00
Ramprasad Neethiraj
6541e151bc
Merge branch 'master' into feat/update_cnvpytor 2022-05-04 13:54:46 +02:00
Mahesh Binzer-Panchal
73a8df9522 Fix no genes found test and update test.yml 2022-05-04 11:52:42 +00:00
Nicolas Vannieuwkerke
c517ce9b4d Added the module and some simple testing 2022-05-04 13:42:12 +02:00
Mahesh Binzer-Panchal
8df20218bf Add more tests and capture summaries
Co-authored-by: Jill V. Hagey, PhD <jvhagey@gmail.com>
2022-05-04 09:22:43 +00:00
Mahesh Binzer-Panchal
3bb0711b06
Merge branch 'master' into busco 2022-05-04 09:15:46 +02:00
Lauri Mesilaakso
530b5ac661
Merge branch 'master' into add_compression_to_bam2fq 2022-05-04 09:53:46 +03:00
Chris Cheshire
7949c1f048
Merge pull request #1607 from luslab/expected_error_fix
Bowtie2 - Added support for large indexes and improved error reporting
2022-05-03 22:27:45 +01:00
Chris Cheshire
79e64cdd1f
Merge branch 'master' into expected_error_fix 2022-05-03 22:21:28 +01:00
JIANHONG OU
dc59ad0bf5 fix the version issue. 2022-05-03 12:27:39 -04:00
jasmezz
480c4ced78 Update meta.yml 2022-05-03 17:35:16 +02:00
jasmezz
fa9f0753de Apply review suggestions + add stub for prokka test workflow 2022-05-03 17:30:16 +02:00
Jill V. Hagey, PhD
f02cd618b8
Update meta.yml 2022-05-03 10:09:19 -04:00
Lauri Mesilaakso
12f79c2101
Merge branch 'master' into add_compression_to_bam2fq 2022-05-03 17:03:02 +03:00
Mahesh Binzer-Panchal
1c54c0b1ae
Apply suggestions from code review
Co-authored-by: Matthieu Muffato <cortexspam-github@yahoo.fr>
2022-05-03 16:02:11 +02:00
Matthieu Muffato
6351ec745e
Update contributor list 2022-05-03 14:56:27 +01:00
Matthieu Muffato
4be754b008
It's a file, not a directory 2022-05-03 14:53:17 +01:00
ljmesi
a39fa4e003 Fix checksum for one file 2022-05-03 15:47:49 +02:00
Mahesh Binzer-Panchal
636abad8f1
Merge branch 'master' into busco 2022-05-03 15:38:25 +02:00
nvnieuwk
1f906a7c6a
Merge pull request #1608 from nvnieuwk/vardict-java-update
Small update to vardict-java
2022-05-03 15:37:52 +02:00
Nicolas Vannieuwkerke
96d4a31cc1 Moved the BED file to the main tuple 2022-05-03 15:31:05 +02:00
Mahesh Binzer-Panchal
5f4781adaa
Merge branch 'master' into busco 2022-05-03 15:27:10 +02:00
Mahesh Binzer-Panchal
57db28386e Support batch fasta analysis 2022-05-03 13:26:49 +00:00
ljmesi
034352dbbf Merge branch 'add_compression_to_bam2fq' of https://github.com/Genomic-Medicine-Linkoping/modules into add_compression_to_bam2fq 2022-05-03 15:18:12 +02:00
ljmesi
5510ea39fe Test --no-name to solve inconsistent checksums 2022-05-03 15:18:09 +02:00
Ramprasad Neethiraj
26311aba2a fix minor errors 2022-05-03 15:04:37 +02:00
Ramprasad Neethiraj
be085c0173 Merge branch 'master' of https://github.com/nf-core/modules into feat/update_cnvpytor 2022-05-03 14:55:42 +02:00
Ramprasad Neethiraj
19cfb4e951 update meta files 2022-05-03 14:53:56 +02:00
Ramprasad Neethiraj
46e5752b82 update tests 2022-05-03 14:32:45 +02:00
Ramprasad Neethiraj
3efa931bf6 view 2022-05-03 14:26:46 +02:00
Ramprasad Neethiraj
829c15c98b partition 2022-05-03 14:26:34 +02:00
Ramprasad Neethiraj
7cc47f6ba6 importrd 2022-05-03 14:25:20 +02:00
Ramprasad Neethiraj
07e026054a histogram 2022-05-03 14:24:54 +02:00
Ramprasad Neethiraj
2990dc8357 callcnv module 2022-05-03 14:20:05 +02:00
Lauri Mesilaakso
a65e76e3dd
Merge branch 'master' into add_compression_to_bam2fq 2022-05-03 14:30:54 +03:00
Chris Cheshire
6f35537d40
Merge branch 'master' into expected_error_fix 2022-05-03 12:21:51 +01:00
Chris Cheshire
1baf143607
Merge pull request #1548 from rpetit3/rp3-add-shigatyper
add module for shigatyper
2022-05-03 12:21:43 +01:00
Chris Cheshire
829183ee84
Merge branch 'master' into rp3-add-shigatyper 2022-05-03 12:16:54 +01:00
Chris Cheshire
b3ee6384e6
Merge pull request #1604 from nf-core/add-slimfastq
feat: add module for slimfastq
2022-05-03 12:16:41 +01:00
Chris Cheshire
6015478b72
Merge branch 'master' into add-slimfastq 2022-05-03 12:11:19 +01:00
Chris Cheshire
d7fb969a74
Merge branch 'master' into rp3-add-shigatyper 2022-05-03 12:10:23 +01:00
Chris Cheshire
40e6bd9dc1 bowtie2|fix tags error 2022-05-03 12:07:04 +01:00
Chris Cheshire
0f1ee7e50d bowtie2|test fixes 2022-05-03 12:04:51 +01:00
Chris Cheshire
61f68913fe
Merge branch 'master' into expected_error_fix 2022-05-03 11:49:35 +01:00
Chris Cheshire
768073be63 bowtie2|Added support for large indexes 2022-05-03 11:46:19 +01:00
Mahesh Binzer-Panchal
012f085378 Prettier 2022-05-03 09:19:39 +00:00
Mahesh Binzer-Panchal
9eff38ff94 Update meta.yml 2022-05-03 09:15:45 +00:00
Mahesh Binzer-Panchal
ddbe6e8f40
Merge branch 'master' into busco 2022-05-03 10:48:03 +02:00
Mahesh Binzer-Panchal
9a72548ee1 Update busco module 2022-05-03 08:42:56 +00:00