FriederikeHanssen
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adc4ff868c
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Merge branch 'master' into samtools_convert
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2022-05-09 16:15:24 +02:00 |
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Mahesh Binzer-Panchal
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3f95464f05
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Merge pull request #1636 from mahesh-panchal/meryl/histogram
Add meryl histogram
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2022-05-09 16:15:13 +02:00 |
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Rike
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da79396f06
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rename aligned to alignment
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2022-05-09 16:07:49 +02:00 |
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Rike
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5bd456e5e8
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rename file_type to output extension
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2022-05-09 16:06:22 +02:00 |
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Rike
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1de1c2253e
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Combine output after code review
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2022-05-09 16:04:58 +02:00 |
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Nicolas Vannieuwkerke
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bd7e1414a4
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Fixed meta.yml
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2022-05-09 15:55:48 +02:00 |
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nvnieuwk
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4b8bd9ebf9
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-09 15:51:31 +02:00 |
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Nicolas Vannieuwkerke
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1b63d03f8e
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adjusted the bed variable name
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2022-05-09 15:51:19 +02:00 |
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Mahesh Binzer-Panchal
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da93beaf60
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Update pytests
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2022-05-09 13:50:49 +00:00 |
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Nicolas Vannieuwkerke
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f6262b4a10
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fixed some issues
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2022-05-09 15:47:07 +02:00 |
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Rike
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24d5e7feed
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Code review suggestions
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2022-05-09 15:42:55 +02:00 |
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Mahesh Binzer-Panchal
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8d86988632
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Merge branch 'master' into meryl/histogram
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2022-05-09 15:39:32 +02:00 |
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nvnieuwk
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d6dd4c2e2d
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Update tests/modules/rtgtools/vcfeval/test.yml
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
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2022-05-09 15:35:16 +02:00 |
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Rike
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ef5f145342
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Generalize Bam2Cram do either conversion
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2022-05-09 15:22:54 +02:00 |
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Annick Renevey
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ac3034696b
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update md5sum
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2022-05-09 15:19:16 +02:00 |
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FriederikeHanssen
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52a62c238b
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Merge branch 'nf-core:master' into master
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2022-05-09 15:05:58 +02:00 |
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Mahesh Binzer-Panchal
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0c567f5474
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Merge branch 'master' into meryl_unionsum
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2022-05-09 15:03:27 +02:00 |
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Mahesh Binzer-Panchal
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f0f414d519
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Update pytests
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2022-05-09 13:00:10 +00:00 |
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Jasmin F
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6b8e7ea8e3
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Merge pull request #1637 from jasmezz/test_data_bacteroides
Update test_data.config: Add Bacteroides fragilis GFF file
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2022-05-09 14:59:15 +02:00 |
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Mahesh Binzer-Panchal
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57fee2b3d6
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Add description pattern
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2022-05-09 12:56:22 +00:00 |
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Annick Renevey
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eed874ace7
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update arriba tests
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2022-05-09 14:55:59 +02:00 |
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Annick Renevey
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bf91f9dd9b
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update arriba module
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2022-05-09 14:55:59 +02:00 |
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Mahesh Binzer-Panchal
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6621768550
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Update pytest outputs
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2022-05-09 12:54:31 +00:00 |
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Jasmin F
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453d5b66a4
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Add Bacteroides fragilis GFF file
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2022-05-09 14:46:18 +02:00 |
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Mahesh Binzer-Panchal
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ce97c87b5d
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Merge branch 'master' into meryl_unionsum
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2022-05-09 13:51:55 +02:00 |
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Harshil Patel
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eb084d1dc0
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Merge pull request #1626 from mahesh-panchal/meryl_count
Meryl Count
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2022-05-09 12:21:09 +01:00 |
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Mahesh Binzer-Panchal
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7a5d5f5766
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Merge branch 'master' into kat_hist
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2022-05-09 13:18:18 +02:00 |
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Mahesh Binzer-Panchal
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a43bc940d6
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Add suggestions from code review
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2022-05-09 11:15:14 +00:00 |
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Mahesh Binzer-Panchal
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129f57ccd9
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Add meryl histogram
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2022-05-09 08:50:28 +00:00 |
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Mahesh Binzer-Panchal
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ad4f8389cb
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Add meryl unionsum
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2022-05-09 08:33:21 +00:00 |
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Mahesh Binzer-Panchal
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32b0fdc9d9
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Merge branch 'master' into meryl_count
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2022-05-09 10:05:28 +02:00 |
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Mahesh Binzer-Panchal
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9ebeb6a702
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Update test
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2022-05-09 08:05:07 +00:00 |
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Matthias De Smet
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3dc18365f6
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-09 10:04:29 +02:00 |
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Lucpen
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38d4f81d20
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Merge pull request #1623 from nf-core/correcting_stubs
fix added correct entry workflow in test.yml
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2022-05-09 10:02:56 +02:00 |
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Mahesh Binzer-Panchal
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4591ea2205
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atomize
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2022-05-09 07:58:58 +00:00 |
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Matthias De Smet
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2b91985aa0
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-09 09:43:48 +02:00 |
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Nicolas Vannieuwkerke
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d18af7358a
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Moved untarring the genome sdf folder to the test itself
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2022-05-09 09:20:42 +02:00 |
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Lucpen
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bdaed264a7
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Merge branch 'master' into correcting_stubs
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2022-05-09 08:54:22 +02:00 |
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James A. Fellows Yates
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8a83ad0518
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Merge branch 'master' into motus_profile
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2022-05-09 08:16:16 +02:00 |
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nvnieuwk
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6fd9246aef
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Update modules/rtgtools/vcfeval/main.nf
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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2022-05-09 08:07:33 +02:00 |
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Maxime U. Garcia
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9cfa06878e
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Merge pull request #1629 from maxulysse/master_typos
fix typos and spacing
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2022-05-08 12:23:23 +02:00 |
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JIANHONG OU
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b2542ee079
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remove the mgc in metadata for motus_profile.
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2022-05-08 06:21:26 -04:00 |
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MaxUlysse
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3d428e2933
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fix spacing
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2022-05-07 15:28:40 +02:00 |
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MaxUlysse
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1013be2623
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fix path to script
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2022-05-07 15:22:52 +02:00 |
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Jose Espinosa-Carrasco
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2c5ecc87ed
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Merge pull request #1628 from nf-core/maxulysse-patch-1
add missing file
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2022-05-06 23:54:04 +02:00 |
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Jose Espinosa-Carrasco
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e2acf28c8f
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Merge branch 'master' into maxulysse-patch-1
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2022-05-06 23:53:27 +02:00 |
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Harshil Patel
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e36489d9e4
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Merge pull request #1627 from nf-core/fix-prefetch
Use a template to add retrying to prefetch
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2022-05-06 19:43:43 +01:00 |
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Harshil Patel
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2676f8eef4
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Merge branch 'master' into fix-prefetch
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2022-05-06 19:33:44 +01:00 |
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Matthias De Smet
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b6dd8d2854
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Merge pull request #1622 from matthdsm/update/snapaligner
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2022-05-06 19:34:09 +02:00 |
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Matthias De Smet
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0752b82c9f
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Merge branch 'master' into update/snapaligner
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2022-05-06 18:57:37 +02:00 |
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