1418 commits

Author	SHA1	Message	Date
Thiseas Christos Lamnidis	37c6fb8fed	Merge remote-tracking branch 'upstream/master' into sexdeterrmine	2022-05-23 17:30:21 +02:00
Thiseas Christos Lamnidis	96260ced83	Add test data to config	2022-05-23 17:15:57 +02:00
Thiseas Christos Lamnidis	9011fc7212	Corrected test-datasets input	2022-05-23 17:08:40 +02:00
FriederikeHanssen	754afa9ff3	Merge branch 'master' into gatk_filter	2022-05-23 15:37:44 +02:00
Thiseas Christos Lamnidis	070dee0f5b	Use newly added test bam	2022-05-23 15:22:22 +02:00
Rike	e34dcdd8bc	add brackets to contains	2022-05-23 13:19:42 +02:00
Rike	dc6ad1bff6	add brackets to contains	2022-05-23 13:07:08 +02:00
Rike	093e3aafdd	contains	2022-05-23 13:04:49 +02:00
Rike	a8de9fd085	test path update	2022-05-23 12:53:36 +02:00
Rike	3af61cfbbc	fix input cardinality for index	2022-05-23 12:26:12 +02:00
Rike	a8dac59c50	md5sum not consistent	2022-05-23 12:10:50 +02:00
Rike	2f36a44f61	nf-core create-test-yml	2022-05-23 12:00:31 +02:00
Rike	cd60b4c6eb	add in testdata paths	2022-05-22 13:35:35 +02:00
Rike	520dd06ca3	add new testdata	2022-05-22 13:25:39 +02:00
Mahesh Binzer-Panchal	2926ec0abb	Add mash screen	2022-05-20 13:23:11 +00:00
Rike	bb3e64647b	Merge remote-tracking branch 'origin/master' into gatk_filter	2022-05-18 15:52:47 +02:00
FriederikeHanssen	44e9cf56fa	Merge branch 'master' into gatk_cnnscore	2022-05-18 15:32:36 +02:00
Rike	e8221cf98e	Merge remote-tracking branch 'origin' into gatk_cnnscore	2022-05-18 14:27:25 +02:00
James A. Fellows Yates	965fabdd54	Merge branch 'master' into motus_profile	2022-05-18 11:25:48 +01:00
Rike	5ae757121f	Add indices and meta	2022-05-17 23:38:26 +02:00
Rike	15fba1dd7c	add filter variant tranches	2022-05-17 23:01:24 +02:00
Rike	afa0f2a995	update test	2022-05-17 22:53:41 +02:00
Rike	265fd882ca	update test	2022-05-17 19:44:48 +02:00
Rike	5f63904a50	update test	2022-05-17 19:37:18 +02:00
Rike	05611cf27c	update pytest	2022-05-17 19:11:05 +02:00
Rike	e0fcbb428d	Add CNNScoreVariants	2022-05-17 19:09:46 +02:00
Jose Espinosa-Carrasco	3614c19206	Merge branch 'master' into biobambam/bammerge	2022-05-17 15:07:37 +02:00
Nicolas Vannieuwkerke	6342f5b099	added bedtools split	2022-05-17 14:24:32 +02:00
Matthias De Smet	c5627e0274	fix config	2022-05-17 09:09:19 +02:00
Matthias De Smet	743e95c61b	fix config	2022-05-17 09:01:02 +02:00
Matthias De Smet	d3ddc2221a	Merge branch 'master' into biobambam/bammerge	2022-05-17 08:26:28 +02:00
Matthias De Smet	6be91ce82d	fix optional output detection	2022-05-17 08:20:47 +02:00
Subazini TK	79c2c529fc	Merge branch 'master' into hmtnote	2022-05-17 08:05:47 +02:00
JIANHONG OU	671bacb6df	Merge branch 'master' into motus_profile	2022-05-16 17:34:49 -04:00
Matthias De Smet	d0db186e84	Merge branch 'master' into biobambam/bammerge	2022-05-16 20:52:48 +02:00
Matthias De Smet	a79b9adeee	address review comments	2022-05-16 20:51:39 +02:00
Subazini TK	252fcb17c4	Update main.nf	2022-05-16 15:20:15 +00:00
Subazini TK	cb21fa0c96	Update main.nf	2022-05-16 15:20:15 +00:00
Subazini TK	cbae48d06d	Update nextflow.config	2022-05-16 15:20:15 +00:00
Subazini TK	541f403963	Update main.nf	2022-05-16 15:20:15 +00:00
Subazini TK	69243db3d7	Update test.yml	2022-05-16 15:20:15 +00:00
Subazini TK	c8c6fdd2e3	Update main.nf	2022-05-16 15:20:15 +00:00
Subazini TK	fb66e8ba97	Update test.yml	2022-05-16 15:20:15 +00:00
Subazini TK	f0713f4723	Update test.yml	2022-05-16 15:20:15 +00:00
Subazini TK	060d33f2c3	Update test.yml	2022-05-16 15:20:15 +00:00
Subazini TK	df8f1eae69	Update test.yml	2022-05-16 15:20:15 +00:00
sysbiocoder	31fc8b560f	hmtnote	2022-05-16 15:20:15 +00:00
sysbiocoder	fe009b738a	modified: tests/config/pytest_modules.yml	2022-05-16 15:20:15 +00:00
Matthias De Smet	af69ea749d	add module: biobambam/bammerge	2022-05-16 14:39:58 +02:00
Veit Schwämmle	74a1c1400e	Merge branch 'master' into maxquant	2022-05-16 13:26:35 +02:00