Harshil Patel
dce27b8102
Update functions.nf to be more flexible for publishing by meta keys ( #423 )
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* Update functions.nf
* Replace saveAs line in module main script
* Add spacing for ECLint
2021-04-09 17:23:56 +01:00
Patrick Hüther
8a44258548
remove params section from meta.yml ( #282 )
2021-03-19 13:16:50 +01:00
Jose Espinosa-Carrasco
572abb00b3
Remove def from module options definition in main ( #270 )
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* Remove def from module options definition in main
* Fix bismark_deduplicate tests
* Fix bwameth_align tests
* Fixing gatk4 conda tests ("=" instead of ':' in build id)
* Same as previous commit (Fix gatk4 test)
* Fix qualimap bamqc test (no md5 check for pngs)
* Fix seqkit split2 tests. Changed to new test data
* Fix samtools tests. Some were missing initOptions include
* Removing TOOL SUBTOOL template module since now it is included on tools repo
2021-03-15 12:16:43 +00:00
drpatelh
dcc580e4fb
Remove Conda build ids for all modules
2021-02-16 23:58:23 +00:00
drpatelh
a0c08e0c06
Fix bedtools complement module
2021-02-07 21:31:02 +00:00
drpatelh
a9102c329c
Fix bedtools complement module
2021-02-07 20:55:12 +00:00
sruthipsuresh
957983bd99
Fixed and tested 4 modules, keeping with fastp module syntax
2021-01-29 23:17:44 -06:00
sruthipsuresh
295fff35ec
Corrected containers and tested
2021-01-29 23:17:44 -06:00
sruthipsuresh
19b55fc67c
Fixed intersect, complement indentation issues
2021-01-29 23:17:44 -06:00
sruthipsuresh
3da39dfc88
Fixed bedtools complement module
2021-01-29 23:17:44 -06:00
sruthipsuresh
8496427c56
Update software/bedtools/complement/main.nf
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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-01-29 23:17:44 -06:00
sruthipsuresh
fc8cdde2b4
Apply suggestions from code review
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Add all initial suggestions from review (syntax issues)
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-01-29 23:17:44 -06:00
sruthipsuresh
e5c21d15a3
Update software/bedtools/complement/main.nf
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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-01-29 23:17:44 -06:00
sruthipsuresh
bf2703f396
Update software/bedtools/complement/main.nf
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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-01-29 23:17:44 -06:00
sruthipsuresh
93f640154a
Update software/bedtools/complement/main.nf
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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-01-29 23:17:44 -06:00
sruthipsuresh
ced2458d78
Update software/bedtools/complement/main.nf
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Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-01-29 23:17:44 -06:00
sruthipsuresh
70de0331a5
Corrected pytest and config
2021-01-29 23:17:44 -06:00
sruthipsuresh
672f94f2af
rebased and updated all bedtools testing and modules
2021-01-29 23:17:44 -06:00
sruthipsuresh
78473edb72
Removed large testing files, will convert to updated testing
2021-01-29 23:17:44 -06:00
Sruthi Suresh
4fca435120
Fixed naming issues and links in meta.yml
2021-01-29 23:17:44 -06:00
Sruthi Suresh
a984c1be7c
Added all modules with basic functionality and updated meta.yml files.
2021-01-29 23:17:44 -06:00
Sruthi Suresh
89e5473b44
Updated modules with the changed container format
2021-01-29 23:17:44 -06:00
Sruthi Suresh
6677c98b11
Updated complement and completed slop module with all parameters available.
2021-01-29 23:17:44 -06:00
Sruthi Suresh
199dfc5ea3
Added complement module with necessary test dir/parameters
2021-01-29 23:17:44 -06:00
drpatelh
c08e6959a5
Reorganise everything
2020-08-05 16:09:25 +01:00
JoseEspinosa
759dd85c92
Removing biocontainer in favor of nf-core container
2020-07-16 10:22:09 +02:00
JoseEspinosa
2cbc988d5f
Bedtools complement adapted to the current module standard
2020-07-15 18:15:16 +02:00
JoseEspinosa
562fc74550
Indentation error in yml
2020-07-14 17:57:42 +02:00
JoseEspinosa
71eaa83bf6
bedtoools/complementBed changed to bedtools/complement
2020-07-14 17:26:45 +02:00
