James Fellows Yates
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58e5c6aece
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Make variables consistent
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2022-05-02 11:55:43 +02:00 |
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James Fellows Yates
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6986975bc0
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Fix output channels allow BLAST table customisation
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2022-05-02 11:39:07 +02:00 |
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James Fellows Yates
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42564565b9
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Update diamond/blastx diamond/blastp to support all possible output formats
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2022-04-29 10:26:17 +02:00 |
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Matthias Hörtenhuber
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e745e167c1
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Fix formatting in yaml files, add yamllint config (#1279)
* fix yml formatting
* allow fastq.gz and fq.gz as file input, add meta.yml and test
* fix yaml files
* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"
This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.
* prettier magic!
* fix comments for yamllint
* remove node version number
* fix linting errors
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2022-02-15 11:15:27 +00:00 |
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Harshil Patel
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49da864287
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Update versions key in meta.yml for all modules (#787)
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2021-10-03 08:20:26 +01:00 |
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Gregor Sturm
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906577873b
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Bulk update modules to use versions.yml (#739)
* New functions.nf
* Convert code to create versions.yml
* Update meta.yml
* update output channel
* Fix more meta.yml
* Manually update remaining modules
* remove superflous echo
* Fix misformatted meta.yml files
* Fix yaml, was list instead of dict
* fix version for bcftools
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-09-27 09:41:24 +01:00 |
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Stephen Ficklin
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ca53f7525b
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Diamond (#710)
* Added diamond
* minor tweaks & yml fix
* Fixed spacing issues due to failing lint
* Update modules/diamond/blastp/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update modules/diamond/blastp/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update modules/diamond/blastp/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update modules/diamond/blastp/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update modules/diamond/blastp/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update modules/diamond/blastx/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update modules/diamond/blastx/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update modules/diamond/blastx/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update modules/diamond/blastx/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update modules/diamond/makedb/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update modules/diamond/makedb/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update tests/modules/diamond/blastp/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update tests/modules/diamond/blastx/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update tests/modules/diamond/blastx/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update tests/modules/diamond/blastp/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
* Update modules/diamond/blastp/meta.yml
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-09-23 09:13:04 +01:00 |
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