Nicolas Vannieuwkerke
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96c3f895b9
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test issue fix?
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2022-05-10 10:19:13 +02:00 |
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Nicolas Vannieuwkerke
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42fbf80c72
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Fixed a test issue with wrong md5sum
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2022-05-10 09:57:49 +02:00 |
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Nicolas Vannieuwkerke
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f0e8f6ce4d
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Linting
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2022-05-10 09:36:54 +02:00 |
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Nicolas Vannieuwkerke
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e5d091ad4b
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Merge branch 'new-module-rtg/vcfeval' of github.com:nvnieuwk/modules into new-module-rtg/vcfeval
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2022-05-10 09:35:44 +02:00 |
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Nicolas Vannieuwkerke
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c69d5cc23e
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Added evaluation-regions and adjusted the output to now contain all output (and not only the summary)
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2022-05-10 09:35:42 +02:00 |
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nvnieuwk
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95103fbd79
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-10 09:06:34 +02:00 |
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Praveen Raj S
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459a2d1759
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Merge branch 'master' into master
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2022-05-09 22:16:59 +02:00 |
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Mahesh Binzer-Panchal
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f65d896f57
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create genomescope2 module
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2022-05-09 15:09:15 +00:00 |
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Mahesh Binzer-Panchal
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2061a41803
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Merge pull request #1634 from mahesh-panchal/meryl_unionsum
Add meryl unionsum
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2022-05-09 16:33:04 +02:00 |
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Mahesh Binzer-Panchal
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705ad7c3a1
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Merge branch 'master' into meryl_unionsum
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2022-05-09 16:20:01 +02:00 |
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nvnieuwk
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aceb5220cf
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-09 16:18:00 +02:00 |
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FriederikeHanssen
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36962150ce
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Merge pull request #1639 from FriederikeHanssen/samtools_convert
Samtools convert
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2022-05-09 16:17:25 +02:00 |
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Mahesh Binzer-Panchal
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83a266ea70
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Merge branch 'master' into meryl_unionsum
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2022-05-09 16:16:08 +02:00 |
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FriederikeHanssen
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adc4ff868c
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Merge branch 'master' into samtools_convert
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2022-05-09 16:15:24 +02:00 |
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Mahesh Binzer-Panchal
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3f95464f05
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Merge pull request #1636 from mahesh-panchal/meryl/histogram
Add meryl histogram
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2022-05-09 16:15:13 +02:00 |
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Rike
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da79396f06
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rename aligned to alignment
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2022-05-09 16:07:49 +02:00 |
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Rike
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5bd456e5e8
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rename file_type to output extension
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2022-05-09 16:06:22 +02:00 |
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Rike
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1de1c2253e
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Combine output after code review
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2022-05-09 16:04:58 +02:00 |
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Nicolas Vannieuwkerke
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bd7e1414a4
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Fixed meta.yml
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2022-05-09 15:55:48 +02:00 |
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nvnieuwk
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4b8bd9ebf9
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-09 15:51:31 +02:00 |
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Nicolas Vannieuwkerke
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1b63d03f8e
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adjusted the bed variable name
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2022-05-09 15:51:19 +02:00 |
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Mahesh Binzer-Panchal
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da93beaf60
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Update pytests
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2022-05-09 13:50:49 +00:00 |
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Nicolas Vannieuwkerke
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f6262b4a10
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fixed some issues
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2022-05-09 15:47:07 +02:00 |
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Rike
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24d5e7feed
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Code review suggestions
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2022-05-09 15:42:55 +02:00 |
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Mahesh Binzer-Panchal
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8d86988632
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Merge branch 'master' into meryl/histogram
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2022-05-09 15:39:32 +02:00 |
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nvnieuwk
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d6dd4c2e2d
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Update tests/modules/rtgtools/vcfeval/test.yml
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
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2022-05-09 15:35:16 +02:00 |
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Rike
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ef5f145342
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Generalize Bam2Cram do either conversion
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2022-05-09 15:22:54 +02:00 |
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Annick Renevey
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ac3034696b
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update md5sum
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2022-05-09 15:19:16 +02:00 |
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FriederikeHanssen
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52a62c238b
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Merge branch 'nf-core:master' into master
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2022-05-09 15:05:58 +02:00 |
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Mahesh Binzer-Panchal
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0c567f5474
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Merge branch 'master' into meryl_unionsum
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2022-05-09 15:03:27 +02:00 |
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Mahesh Binzer-Panchal
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f0f414d519
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Update pytests
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2022-05-09 13:00:10 +00:00 |
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Jasmin F
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6b8e7ea8e3
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Merge pull request #1637 from jasmezz/test_data_bacteroides
Update test_data.config: Add Bacteroides fragilis GFF file
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2022-05-09 14:59:15 +02:00 |
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Mahesh Binzer-Panchal
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57fee2b3d6
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Add description pattern
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2022-05-09 12:56:22 +00:00 |
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Annick Renevey
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eed874ace7
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update arriba tests
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2022-05-09 14:55:59 +02:00 |
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Annick Renevey
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bf91f9dd9b
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update arriba module
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2022-05-09 14:55:59 +02:00 |
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Mahesh Binzer-Panchal
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6621768550
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Update pytest outputs
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2022-05-09 12:54:31 +00:00 |
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Jasmin F
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453d5b66a4
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Add Bacteroides fragilis GFF file
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2022-05-09 14:46:18 +02:00 |
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Mahesh Binzer-Panchal
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ce97c87b5d
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Merge branch 'master' into meryl_unionsum
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2022-05-09 13:51:55 +02:00 |
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Harshil Patel
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eb084d1dc0
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Merge pull request #1626 from mahesh-panchal/meryl_count
Meryl Count
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2022-05-09 12:21:09 +01:00 |
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Mahesh Binzer-Panchal
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7a5d5f5766
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Merge branch 'master' into kat_hist
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2022-05-09 13:18:18 +02:00 |
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Mahesh Binzer-Panchal
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a43bc940d6
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Add suggestions from code review
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2022-05-09 11:15:14 +00:00 |
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Mahesh Binzer-Panchal
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129f57ccd9
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Add meryl histogram
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2022-05-09 08:50:28 +00:00 |
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Mahesh Binzer-Panchal
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ad4f8389cb
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Add meryl unionsum
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2022-05-09 08:33:21 +00:00 |
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Mahesh Binzer-Panchal
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32b0fdc9d9
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Merge branch 'master' into meryl_count
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2022-05-09 10:05:28 +02:00 |
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Mahesh Binzer-Panchal
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9ebeb6a702
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Update test
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2022-05-09 08:05:07 +00:00 |
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Matthias De Smet
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3dc18365f6
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-09 10:04:29 +02:00 |
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Lucpen
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38d4f81d20
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Merge pull request #1623 from nf-core/correcting_stubs
fix added correct entry workflow in test.yml
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2022-05-09 10:02:56 +02:00 |
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Mahesh Binzer-Panchal
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4591ea2205
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atomize
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2022-05-09 07:58:58 +00:00 |
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Matthias De Smet
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2b91985aa0
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Merge branch 'master' into new-module-rtg/vcfeval
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2022-05-09 09:43:48 +02:00 |
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Nicolas Vannieuwkerke
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d18af7358a
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Moved untarring the genome sdf folder to the test itself
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2022-05-09 09:20:42 +02:00 |
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