sruthipsuresh
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3b581d1912
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Updated test.yml
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2021-01-12 08:56:11 -06:00 |
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sruthipsuresh
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a2faeb703f
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Fixed md5sums
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2021-01-12 08:50:20 -06:00 |
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sruthipsuresh
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cb39fcb915
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Added preseq module and workflow
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2021-01-12 08:41:09 -06:00 |
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Chris Cheshire
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7e9cbfc8d1
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Merge remote-tracking branch 'nf-core/master'
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2021-01-05 09:10:11 +00:00 |
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sruthipsuresh
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e1a3d1b18a
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Corrected naming to ensure test checks work
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2020-12-21 19:53:03 -06:00 |
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sruthipsuresh
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5319eabbc5
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removed md5sums for pdf, rdata
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2020-12-19 06:09:04 -06:00 |
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sruthipsuresh
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522b896534
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Workflow and md5sums added
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2020-12-19 06:09:04 -06:00 |
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sruthipsuresh
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8c088d473b
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Corrected bash error, tested process
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2020-12-19 06:09:04 -06:00 |
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Sruthi Suresh
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10d0058a1a
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added test file for phantompeakqualtools for testing
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2020-12-19 06:09:04 -06:00 |
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Harshil Patel
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c98f9284a2
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Merge pull request #89 from KevinMenden/master
Add bowtie module
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2020-12-18 14:56:29 +00:00 |
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kevinmenden
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8f75bac67e
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update test.bam md5sums
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2020-12-18 11:16:58 +01:00 |
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kevinmenden
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db0b631906
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removed index from test output
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2020-12-18 11:06:02 +01:00 |
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kevinmenden
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299a3fa07e
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adding .index back
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2020-12-18 10:58:37 +01:00 |
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kevinmenden
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07f0a2476a
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fixed linting errors
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2020-12-18 09:50:05 +01:00 |
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Chris Cheshire
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a57169a5da
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seacr | updated test script
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2020-12-17 14:23:20 +00:00 |
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Chris Cheshire
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b24834dfce
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seacr | local testing implimented
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2020-12-17 14:20:24 +00:00 |
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kevinmenden
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f35850bf14
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bowtie bam output
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2020-12-16 11:02:58 +01:00 |
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drpatelh
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141ca290b7
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Change md5sum for picard Markduplicates due to version bump
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2020-12-14 00:44:49 +00:00 |
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kevinmenden
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0d7c8276b7
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added test yml and md5s
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2020-12-09 16:54:11 +01:00 |
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kevinmenden
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42020ce5ac
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added tests for bowtie paired-end alignment; resolved index bug
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2020-12-09 16:39:05 +01:00 |
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Harshil Patel
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79a0ce79ab
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Merge pull request #82 from abhi18av/master
Add multiqc module
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2020-12-09 11:31:07 +00:00 |
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Abhinav Sharma
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0c9f29e0a2
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Give finishing touches after the review
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2020-12-08 19:08:00 +05:30 |
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Abhinav Sharma
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b56a0322ab
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Apply suggestions from code review by @drpatelh
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2020-12-08 18:57:14 +05:30 |
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kevinmenden
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fee0707af1
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added bowtie_align workflow test
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2020-12-08 14:19:34 +01:00 |
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kevinmenden
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6660a597a3
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added tests for bowtie module
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2020-12-08 13:59:14 +01:00 |
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kevinmenden
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9d67da2b2c
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added module yml files
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2020-12-08 13:40:32 +01:00 |
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Abhinav Sharma
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5949bfc15b
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Edit the location of multiqc_config file
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2020-12-04 22:55:15 +05:30 |
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Abhinav Sharma
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27b4b29976
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Remove the extra data files
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2020-12-04 20:20:59 +05:30 |
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Abhinav Sharma
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3da7aec183
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Update the signatures
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2020-12-04 12:25:16 +05:30 |
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Abhinav Sharma
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a30df8a59b
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Iterate again on MultiQC
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2020-12-04 12:11:17 +05:30 |
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Abhinav Sharma
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84c0bda00e
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Apply suggestions from code review by @Emiller88
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2020-12-03 12:57:24 +05:30 |
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Abhinav Sharma
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5fd3ba3ce6
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Update the tests for MultiQC
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2020-12-02 13:09:32 +05:30 |
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Edmund Miller
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6404c3390d
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ci(fastqc): Remove md5sums
These may not work across nextflow versions
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2020-12-01 11:18:55 -06:00 |
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Abhinav Sharma
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b43c1f3937
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Refactor the multiqc test code
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2020-12-01 12:19:52 +05:30 |
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Edmund Miller
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2fc39e02e2
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test(trimgalore): Refactor se and pe to use pytest-workflow
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2020-11-24 21:08:34 -06:00 |
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Edmund Miller
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b2cd464ad3
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test(samtools): Refactor stats to use pytest-workflow
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2020-11-24 21:08:34 -06:00 |
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Edmund Miller
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36bbf6baa3
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test(samtools): Refactor sort to use pytest-workflow
Pretty sure this is passing it a sorted bam though?
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2020-11-24 21:08:34 -06:00 |
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Edmund Miller
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6448638b55
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test(samtools): Refactor index to use pytest-workflow
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2020-11-24 21:08:34 -06:00 |
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Edmund Miller
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16cb794892
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test(samtools): Refactor idxstats to use pytest-workflow
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2020-11-24 21:08:34 -06:00 |
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Edmund Miller
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34d86427a6
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test(samtools): Refactor flagstat to use pytest-workflow
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2020-11-24 21:08:33 -06:00 |
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Edmund Miller
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d1a77b2fb2
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test(picard): Add failing test for markduplicates
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2020-11-24 21:08:33 -06:00 |
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Edmund Miller
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7848019cdb
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test(picard): Refactor markduplicates to use pytest-workflow
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2020-11-24 21:08:33 -06:00 |
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Edmund Miller
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d009420a0c
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test(fastqc): Fix md5sums
These must have gotten messed up at some point
83539fcdf2 is my guess
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2020-11-24 21:08:33 -06:00 |
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Edmund Miller
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939f5ca744
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test(picard): Refactor collectmultiplemetrics to use pytest-workflow
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2020-11-24 21:03:40 -06:00 |
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Edmund Miller
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234e85bdce
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test(picard): Refactor mergesamfiles to use pytest-workflow
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2020-11-24 19:01:12 -06:00 |
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Edmund Miller
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016d8684f3
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test(bwa): Refactor to use pytest-workflow
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2020-11-24 19:00:11 -06:00 |
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Edmund Miller
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83539fcdf2
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test(fastqc): restructure under software/fastqc
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2020-11-24 15:30:51 -06:00 |
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