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Author	SHA1	Message	Date
Candice	7cc1319801	luslab-umitools | Renamed dedup.nf to main.nf	2020-06-01 15:18:49 +02:00
Candice	e00b7bd91e	luslab-umitools | Added parameter overriding function to umi_tools	2020-06-01 15:02:21 +02:00
Candice	549f81e4ea	luslab-umitools | Created a Dockerfile for umi_tools module	2020-06-01 14:52:43 +02:00
Candice	bfdccfe1b9	luslab-umitools | Initialized test.nf	2020-06-01 14:40:50 +02:00
Candice	ab2d819df3	luslab-umitools | Renamed umi-tools.nf to dedup.nf	2020-06-01 14:40:50 +02:00
Candice	ff243acf63	luslab-umitools | Created umitool.nf file in the dedup folder	2020-06-01 14:40:50 +02:00
Candice	baa5805350	luslab-umitools | Created test.nf and test folder in umi_tools/dedup	2020-06-01 14:40:50 +02:00
FelixKrueger	a2104ca3b9	Added HISAT2 module and test workflow	2020-03-20 11:04:25 +00:00
FelixKrueger	a526551300	Added Bowtie2 module and test workflow	2020-03-19 18:13:15 +00:00
FelixKrueger	974c6168d6	Added short description of MultiQC	2020-03-18 10:06:38 +00:00
FelixKrueger	223077e5a6	MultiQC module and test workflow	2020-03-17 21:46:21 +00:00
FelixKrueger	6208ac9799	Added functional Trim Galore module	2020-03-16 17:49:39 +00:00
Alexander Peltzer	9dee710b04	Merge pull request #25 from piotr-faba-ardigen/add_cutadapt_tool ... Add cutadapt tool	2020-03-16 18:46:00 +01:00
Harshil Patel	7738dbe4df	Merge pull request #26 from nf-core/readme-update-modules ... Propose module organization	2020-03-16 14:49:24 +00:00
Harshil Patel	5e71d61f27	Update README.md	2020-03-16 14:47:20 +00:00
Harshil Patel	d553406fa5	Update README.md	2020-03-16 14:47:11 +00:00
Harshil Patel	300e89c4dc	Update README.md	2020-03-16 14:47:03 +00:00
Alexander Peltzer	95d57bcef2	Apply suggestions from code review ... Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>	2020-03-16 15:42:52 +01:00
FelixKrueger	f8916eb9b5	FastQC module is working and now accepting arguments	2020-03-16 14:17:38 +00:00
Alexander Peltzer	771e53625b	Update README.md	2020-03-16 14:42:22 +01:00
Alexander Peltzer	05b4bbe8a1	Update README.md	2020-03-16 14:39:27 +01:00
Alexander Peltzer	f091e174c0	Update README.md	2020-03-16 14:37:07 +01:00
Alexander Peltzer	9753e803e0	Update README.md	2020-03-16 14:27:08 +01:00
Alexander Peltzer	4303ec700c	Propose module organization ... See above changes to readme :_)	2020-03-16 14:06:03 +01:00
FelixKrueger	0ceb45068e	FastQ Screen works with E coli paired-end test file	2020-03-10 22:14:25 +00:00
FelixKrueger	d9a3b02b00	Updated yaml description	2020-03-10 14:13:36 +00:00
JoseEspinosa	787bf44c62	Name was fixed to tcoffee instead of FastQC (used as template)	2020-03-06 16:35:02 +01:00
Piotr Faba	6fd86ad9e5	2 tests	2020-03-06 14:56:33 +00:00
Piotr Faba	fa134a1196	fix path error	2020-03-06 14:54:26 +00:00
Piotr Faba	2646e55e2b	get test working	2020-03-06 14:50:29 +00:00
Piotr Faba	660be04708	fix test	2020-03-06 14:41:37 +00:00
Piotr Faba	36cad50593	test submodules checkout	2020-03-06 14:38:49 +00:00
Piotr Faba	977a9b3ee8	test fix	2020-03-06 14:34:34 +00:00
Phil Ewels	c8ceddfe77	Tidying, add samtools and trim_galore	2020-03-06 14:33:48 +00:00
Piotr Faba	f33dd2d2e9	add ci test	2020-03-06 14:31:44 +00:00
Piotr Faba	c90474202c	update meta	2020-03-06 14:23:32 +00:00
Phil Ewels	198e9a85eb	FastQC: add dockerfile and environment.yml	2020-03-06 14:04:18 +00:00
Piotr Faba	1c941ef8d6	Update test-data commit and references	2020-03-06 13:59:14 +00:00
Piotr Faba	490eca706c	single and paired end supported	2020-03-06 13:23:12 +00:00
FelixKrueger	a6f7296e22	Initial commit	2020-03-06 13:21:17 +00:00
Phil Ewels	b3cc751e78	Build tool docker images: first attempt	2020-03-06 11:54:09 +00:00
JoseEspinosa	bcc89c27ca	Fixing command to run nxf	2020-03-06 12:47:55 +01:00
JoseEspinosa	7fe0a936f6	Fixing another typo on the yml for CI github actions	2020-03-06 12:41:07 +01:00
JoseEspinosa	36c0c56fdd	Fixing typo on the yml for CI github actions	2020-03-06 12:38:21 +01:00
JoseEspinosa	5f9cf40f5a	Changing publishDir to take params.outdir and modifying yml for github actions	2020-03-06 12:23:23 +01:00
JoseEspinosa	5de4c86bac	symlink working? (github actions error)	2020-03-06 12:02:40 +01:00
Piotr Faba	88bc7dcdd8	the module is working in test	2020-03-06 10:51:46 +00:00
JoseEspinosa	4312ddc1fe	Is the file in the submodule? (github actions error)	2020-03-06 11:46:37 +01:00
JoseEspinosa	c8c2d0e659	Trying to fix git actions	2020-03-05 17:48:10 +01:00
JoseEspinosa	5bb7d9c497	Updating submodule with tcoffee dataset	2020-03-05 17:39:00 +01:00