annacprice
|
e623dca3b7
|
initial commit of shovill
|
2020-03-05 09:29:23 +00:00 |
|
MaxUlysse
|
3e8475baf0
|
add social preview image
|
2020-02-12 15:27:56 +01:00 |
|
Maxime Garcia
|
f62fad63ca
|
Merge pull request #12 from MaxUlysse/dev
Add some modules
|
2020-02-10 17:10:35 +01:00 |
|
Maxime Garcia
|
48be154434
|
Update tools/bwa/index/meta.yml
Co-Authored-By: Olga Botvinnik <olga.botvinnik@gmail.com>
|
2020-01-24 10:39:52 +01:00 |
|
MaxUlysse
|
7fbfd2d6cb
|
add samtools faidx to index fasta file
|
2020-01-23 11:36:21 +01:00 |
|
MaxUlysse
|
b8dda67338
|
add htslib tabix to index bgzipped vcf files
|
2020-01-23 11:35:49 +01:00 |
|
MaxUlysse
|
9db873c3bc
|
add gatk dict to create dictionnary from fasta file
|
2020-01-23 11:35:19 +01:00 |
|
MaxUlysse
|
a69aebd01b
|
fix index process
|
2020-01-23 10:19:00 +01:00 |
|
MaxUlysse
|
ad3c14a964
|
fix typo
|
2020-01-21 11:25:13 +01:00 |
|
MaxUlysse
|
1f46499e3b
|
add bwa index
|
2020-01-21 11:24:32 +01:00 |
|
Phil Ewels
|
a88b867498
|
Merge pull request #10 from ewels/master
Fix trim galore process name
|
2019-12-06 11:24:45 +01:00 |
|
Phil Ewels
|
5fbde1c69d
|
Fix trim galore process name
|
2019-12-06 11:24:07 +01:00 |
|
Phil Ewels
|
4eb1428931
|
Added empty test_import.nf file
|
2019-12-06 10:38:57 +01:00 |
|
Maxime Garcia
|
9fd356468d
|
Merge pull request #9 from ewels/master
Added samtools, restructured directory structures
|
2019-12-06 10:37:42 +01:00 |
|
Phil Ewels
|
c77ea13d35
|
Fixed FastQC tests with submodule
|
2019-12-06 10:15:49 +01:00 |
|
Phil Ewels
|
93f7b26aa2
|
Use submodules for test data
|
2019-12-06 09:24:33 +01:00 |
|
Phil Ewels
|
36df850298
|
Added test-datasets as a git submodule
|
2019-12-06 09:19:00 +01:00 |
|
Phil Ewels
|
51bd2c0277
|
Ansi log false for tests
|
2019-12-05 22:20:02 +01:00 |
|
Phil Ewels
|
e2a205c8df
|
Added nextflow.config files for all
|
2019-12-05 22:18:33 +01:00 |
|
Phil Ewels
|
eb41e5ebba
|
FastQC: actually run a test
|
2019-12-05 22:11:12 +01:00 |
|
Phil Ewels
|
ef486a908b
|
Use empty dict instead for workflow
|
2019-12-05 16:09:28 +01:00 |
|
Phil Ewels
|
d682c6f7a8
|
Workflows: test everything on paths
|
2019-12-05 16:08:12 +01:00 |
|
Phil Ewels
|
a065ac3532
|
Actions: install nextflow
|
2019-12-05 16:03:00 +01:00 |
|
Phil Ewels
|
acc4eb0054
|
GitHub actions - run nextflow in a docker image
|
2019-12-05 15:57:32 +01:00 |
|
Phil Ewels
|
af766a9cc7
|
Added TrimGalore
|
2019-12-05 15:53:38 +01:00 |
|
Phil Ewels
|
497573fc5d
|
Refactor GitHub actions workflows
|
2019-12-05 15:44:10 +01:00 |
|
Phil Ewels
|
8837c2b81d
|
GitHub actions: paths, not path
|
2019-12-05 15:39:01 +01:00 |
|
Phil Ewels
|
97fbd32644
|
Added samtools sort + index
Added container to FastQC
|
2019-12-05 15:36:35 +01:00 |
|
Phil Ewels
|
5e4c023edd
|
Start work on FastQC module files
|
2019-12-05 15:18:09 +01:00 |
|
Phil Ewels
|
4582ab344c
|
Add GitHub Actions, put FastQC in to a directory
|
2019-12-05 14:52:43 +01:00 |
|
Harshil Patel
|
ada7b5f9a3
|
Merge pull request #5 from ewels/master
Replace Slack join URL
|
2019-07-30 15:33:41 +01:00 |
|
Phil Ewels
|
44b6e1250d
|
Replace Slack join URL
|
2019-07-30 16:31:44 +02:00 |
|
drpatelh
|
adb9074f55
|
Typo
|
2019-07-26 16:06:49 +01:00 |
|
drpatelh
|
56608c0ad4
|
FastQC prototype with docs
|
2019-07-26 16:05:13 +01:00 |
|
drpatelh
|
c4456ad334
|
Fix links
|
2019-07-26 13:38:08 +01:00 |
|
drpatelh
|
eb9aeea775
|
Refine README
|
2019-07-26 13:30:26 +01:00 |
|
drpatelh
|
ef8c13a7d8
|
Fill out repo
|
2019-07-26 10:19:07 +01:00 |
|
drpatelh
|
8f5a297705
|
first commit
|
2019-07-26 09:54:25 +01:00 |
|