Commit graph

2407 commits

Author SHA1 Message Date
Mahesh Binzer-Panchal
7a5d5f5766
Merge branch 'master' into kat_hist 2022-05-09 13:18:18 +02:00
Lucpen
38d4f81d20
Merge pull request #1623 from nf-core/correcting_stubs
fix added correct entry workflow in test.yml
2022-05-09 10:02:56 +02:00
Lucpen
bdaed264a7
Merge branch 'master' into correcting_stubs 2022-05-09 08:54:22 +02:00
Maxime U. Garcia
9cfa06878e
Merge pull request #1629 from maxulysse/master_typos
fix typos and spacing
2022-05-08 12:23:23 +02:00
MaxUlysse
3d428e2933 fix spacing 2022-05-07 15:28:40 +02:00
MaxUlysse
1013be2623 fix path to script 2022-05-07 15:22:52 +02:00
Jose Espinosa-Carrasco
2c5ecc87ed
Merge pull request #1628 from nf-core/maxulysse-patch-1
add missing file
2022-05-06 23:54:04 +02:00
Jose Espinosa-Carrasco
e2acf28c8f
Merge branch 'master' into maxulysse-patch-1 2022-05-06 23:53:27 +02:00
Harshil Patel
e36489d9e4
Merge pull request #1627 from nf-core/fix-prefetch
Use a template to add retrying to prefetch
2022-05-06 19:43:43 +01:00
Harshil Patel
2676f8eef4
Merge branch 'master' into fix-prefetch 2022-05-06 19:33:44 +01:00
Matthias De Smet
b6dd8d2854
Merge pull request #1622 from matthdsm/update/snapaligner 2022-05-06 19:34:09 +02:00
Matthias De Smet
0752b82c9f
Merge branch 'master' into update/snapaligner 2022-05-06 18:57:37 +02:00
Matthias De Smet
dd458e3388 fix tags 2022-05-06 18:57:17 +02:00
Maxime U. Garcia
ac217479e9
Update tests/config/test_data.config
Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
2022-05-06 18:18:32 +02:00
Maxime U. Garcia
ec7b460fa4
add missing file 2022-05-06 17:54:35 +02:00
Moritz E. Beber
ea41c753c0 fix: remove retry label
Call gets retried by bash script
2022-05-06 17:28:56 +02:00
Moritz E. Beber
dd1c66783a refactor: use a template to add retrying 2022-05-06 17:26:41 +02:00
Moritz E. Beber
ed09978222 chore: update build number 2022-05-06 17:26:41 +02:00
Mahesh Binzer-Panchal
1e55ad987f
Merge branch 'master' into kat_hist 2022-05-06 16:35:51 +02:00
Sateesh Peri
e13d634764
Merge pull request #1239 from priyanka-surana/busco
Busco
2022-05-06 10:11:42 -04:00
Lucpen
8e5fda3b10
Merge branch 'master' into correcting_stubs 2022-05-06 15:37:08 +02:00
Lucpen
971a17a3ab fix datatest for stubs 2022-05-06 15:34:18 +02:00
Mahesh Binzer-Panchal
7a85760d08 remove 'auto' test 2022-05-06 13:33:27 +00:00
Lucpen
0fa36e6777 fix added correct entry workflow in test.yml 2022-05-06 15:26:34 +02:00
Matthias De Smet
26d2231e85 fix linting 2022-05-06 14:16:38 +02:00
Matthias De Smet
3930ba227b merge snapaligner modes into one 2022-05-06 14:10:44 +02:00
Mahesh Binzer-Panchal
9fa6b6c1fc Update meta.yml 2022-05-06 11:56:43 +00:00
Mahesh Binzer-Panchal
a9f23bb477
Merge branch 'master' into busco 2022-05-06 13:49:01 +02:00
Mahesh Binzer-Panchal
35c5828f43 Add --auto-lineage option and remove single_end
Co-authored-by: Jill V. Hagey, PhD <jvhagey@gmail.com>
2022-05-06 11:48:21 +00:00
Jose Espinosa-Carrasco
56e9e6b921
Merge pull request #1619 from matthdsm/modules/md5sum
new modules : md5sum / sha256sum
2022-05-06 12:37:49 +02:00
Jose Espinosa-Carrasco
035655e35d
Merge branch 'master' into modules/md5sum 2022-05-06 12:34:14 +02:00
Ramprasad Neethiraj
2ad7cb8a49
Merge pull request #1617 from ramprasadn/feat/update_cnvpytor
Cnvpytor - merging calls from multiple samples
2022-05-06 12:03:49 +02:00
Ramprasad Neethiraj
e639b1e455
Merge branch 'master' into feat/update_cnvpytor 2022-05-06 12:03:12 +02:00
Ramprasad Neethiraj
77209d0866
Merge pull request #1618 from ramprasadn/feat/update_svdb
update svdb version
2022-05-06 11:48:22 +02:00
Matthias De Smet
bd1b80f36e fix software definitions 2022-05-06 11:07:05 +02:00
Ramprasad Neethiraj
1ccea5ff4d remove prefix def in callcnvs 2022-05-06 10:56:58 +02:00
Mahesh Binzer-Panchal
c19e7da59d
Apply suggestions from code review
Remove versions md5sum

Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
2022-05-06 10:55:48 +02:00
Matthias De Smet
1c7205d683 fixed container definitions 2022-05-06 10:44:51 +02:00
Matthias De Smet
77d825e043 fix copy paste errors 2022-05-06 10:39:13 +02:00
Matthias De Smet
09e729ad41 added sha256sum 2022-05-06 10:28:14 +02:00
Mahesh Binzer-Panchal
d83281eac9
Merge branch 'master' into kat_hist 2022-05-06 10:02:44 +02:00
Mahesh Binzer-Panchal
9194fb845e Add module kat hist 2022-05-06 07:54:10 +00:00
Matthias De Smet
853b623969 new module: md5sum 2022-05-06 09:20:40 +02:00
Ramprasad Neethiraj
313d76e005 update svdb version 2022-05-06 00:18:16 +02:00
Ramprasad Neethiraj
bb5c904e59 Merge branch 'feat/update_cnvpytor' of github.com:ramprasadn/modules into feat/update_cnvpytor 2022-05-06 00:13:57 +02:00
Ramprasad Neethiraj
af73544010 update meta 2022-05-06 00:13:49 +02:00
Ramprasad Neethiraj
db56d80060 Merge branch 'master' of https://github.com/nf-core/modules into feat/update_cnvpytor 2022-05-06 00:10:28 +02:00
Ramprasad Neethiraj
1a3f18d012
Merge branch 'master' into feat/update_cnvpytor 2022-05-06 00:10:05 +02:00
Ramprasad Neethiraj
e4e4f8090c combine multiple pytor 2022-05-05 23:59:12 +02:00
Sateesh Peri
faf45edc5e
Merge branch 'master' into busco 2022-05-05 12:48:39 -04:00