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10 commits

Author SHA1 Message Date
James A. Fellows Yates
4b1d4bf401
Update MULTIQC for an additional custom config (#2063) 
* Update main.nf

* Update meta.yml

* Re-add logos as not staged in a way that works with MultiQC config files

* Add support for secondary custom configs
 2022-09-15 13:53:15 +02:00
James A. Fellows Yates
16eee433b8
Update MultiQC to re-add staging logos as a separate input channel (#2032) 
* Update main.nf

* Update meta.yml

* Re-add logos as not staged in a way that works with MultiQC config files
 2022-09-08 12:36:15 +02:00
James A. Fellows Yates
8d2fedadff
Multiqc sep logo (#2028) 
* Separate MultiQC config from logo input channel

* Update meta.yml

* Update main.nf

* Add test for new check

* md5sum -> contains

* Remove logo input channel from MultiQC
 2022-09-08 10:47:08 +02:00
James A. Fellows Yates
31166227d3
Modify MULTIQC: separate logo from config file (#2027) 
* Separate MultiQC config from logo input channel

* Update meta.yml

* Update main.nf

* Add test for new check

* md5sum -> contains
 2022-09-08 09:12:53 +02:00
Matthias De Smet
439d2a9e67 update mqc inputs 2022-06-08 13:48:27 +02:00
Matthias Hörtenhuber
e745e167c1
Fix formatting in yaml files, add yamllint config (#1279) 
* fix yml formatting

* allow fastq.gz and fq.gz as file input, add meta.yml and test

* fix yaml files

* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"

This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.

* prettier magic!

* fix comments for yamllint

* remove node version number

* fix linting errors

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
 2022-02-15 11:15:27 +00:00
Kevin
3aacd46da2
Backfill software licenses meta (#876) 
* backfilled modules with meta.yml that had no license identifier

* harmonized BSD license names

* whitespace linting at modules/unzip/meta.yml:12

* harmonized software from US NIH-NCBI/NIST to 'US-Government-Work'

* Update modules/bcftools/index/meta.yml

`bcftools` is dual-licensed, use associative array to allow for multiple licenses

Co-authored-by: Michael L Heuer <heuermh@acm.org>

Co-authored-by: Michael L Heuer <heuermh@acm.org>
 2021-10-22 15:39:54 -07:00
Harshil Patel
49da864287
Update versions key in meta.yml for all modules (#787) 2021-10-03 08:20:26 +01:00
Gregor Sturm
ab67a1d41b
Update fastqc to produce multi-version versions.yml (#665) 
* Update fastqc to produce multi-version versions.yml

* Update readme and pull request template

* Fix markdownlint

* remove  variable

* Change publish dir to lowercase

* Re-add getSoftwareName

* Add custom pytest-workflow test to ensure versions.yml is valid

* Add docstring

* Remove __init__.py as it is not needed

* Remove changes to README, since this part went to nf-co.re

* Add NF_CORE_TEST env var

* Fix editorconfig

* Add additional consistency checks for versions.yml

* Update multiqc module

* Fix output channel
 2021-09-24 10:01:54 +01:00
Harshil Patel
e937c7950a
Rename software/ directory to modules/ to re-organise module structure (#567) 
* Update README

* Rename pytest_software.yml to pytest_modules.yml

* Rename main software directory to modules

* Remove deprecated modules

* Rename tests software to modules

* Replace paths for tests in pytest_modules.yml

* Replace software with modules in Github Actions

* Replace software with modules in main.nf tests

* Rename software to modules in test.yml
 2021-07-07 10:10:18 +01:00
Renamed from software/multiqc/meta.yml (Browse further)