58 commits

Author	SHA1	Message	Date
GCJMackenzie	1023a98b51	Getpileupsummaries (#689) ... * first commit, added template files for new module * created getpileupsummaries script, tests and both yml files * fixed typo in meta.yml * Update modules/gatk4/getpileupsummaries/meta.yml changed gz_tbi to gz.tbi as suggested Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> Co-authored-by: GCJMackenzie <gavin.mackenzie@nibsc.org> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com> Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>	2021-09-13 16:04:14 +01:00
Maxime U. Garcia	b3c4667732	fix: update to gatk4.2.0.0 (#575) ... * fix: update to gatk4.2.0.0 * fix: update md5sum	2021-07-16 11:26:28 +02:00
Maxime U. Garcia	d624336cc1	fix: update to gatk4.2.0.0 (#580)	2021-07-16 11:25:22 +02:00
Maxime U. Garcia	c8877835c2	fix: update to gatk4.2.0.0 (#579)	2021-07-16 11:24:29 +02:00
Maxime U. Garcia	e7be649029	fix: update to gatk4.2.0.0 (#578)	2021-07-16 11:23:08 +02:00
Maxime U. Garcia	9fb21e1a84	fix: update to gatk4.2.0.0 (#577)	2021-07-16 11:22:01 +02:00
Maxime U. Garcia	bee23ba899	fix: update to gatk4.2.0.0 (#576)	2021-07-16 11:18:27 +02:00
Harshil Patel	e937c7950a	Rename software/ directory to modules/ to re-organise module structure (#567) ... * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml	2021-07-07 10:10:18 +01:00