Rike
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89a6a03e38
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fix container tag
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2022-06-09 15:09:19 +02:00 |
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Rike
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b9e397ff15
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use broadinstitute container
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2022-06-09 15:06:46 +02:00 |
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Rike
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ef5b0dd977
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gatk4 version update to 4.2.6.1
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2022-06-09 14:54:19 +02:00 |
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SusiJo
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cda434611f
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fix conda with openjdk 1.8
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2022-06-09 10:24:39 +02:00 |
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SusiJo
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dbca9e8b36
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adjusted prefix + test + authors
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2022-06-07 13:58:57 +02:00 |
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SusiJo
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e2bb56608c
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change prefix output
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2022-06-03 13:50:45 +02:00 |
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SusiJo
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230224700e
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change prefix
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2022-06-03 13:20:45 +02:00 |
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SusiJo
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efc1e1bb71
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rm line
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
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2022-06-02 16:23:18 +02:00 |
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SusiJo
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44daa5d687
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update prefix
Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
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2022-06-02 16:23:09 +02:00 |
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SusiJo
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39e34418c9
|
added metrics as optional output
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2022-05-31 14:34:50 +02:00 |
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SusiJo
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b34e5ea6bf
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rm unnecessary spark_user
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2022-05-25 16:38:48 +02:00 |
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Maxime U. Garcia
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e04970b7d2
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typo in command line (#1523)
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2022-04-13 15:15:44 +02:00 |
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Maxime U. Garcia
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409af2f27c
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
* feat: code polishing
* Apply suggestions from code review
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
* code polishing
* more code polishing
* code polishing
* tests for applybqsrspark
* fix typo
* no need to check md5sum for versions.yml
* fix: use correct syntax
* code polishing again
* add tests for markduplicatesspark
* simplify mergevcfs tests
* add tests for baserecalibratorspark
* fix: path to entry
* code polishing
* fix linting
* simplify module
* update meta.yml
* fix pair mode
* fix: MITO mode
* more tests
* fix command
* bad copy paste
* fix typos
* fix tests
* fix test
* update meta.yml
* correct versions.yml in all test.yml
* code polishing
* code polishing
* more code polishing
* fix args
* add tmpdir for all
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
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2022-04-12 17:15:39 +02:00 |
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