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Author	SHA1	Message	Date
nvnieuwk	486cc1d142	Merge pull request #1611 from nvnieuwk/split-hap.py-into-two-modules ... Split hap.py into two parts	2022-05-04 15:49:31 +02:00
Nicolas Vannieuwkerke	42bdc5471e	Changed the pytest location of happy	2022-05-04 15:40:34 +02:00
Nicolas Vannieuwkerke	f875aec46b	Split the module into two parts	2022-05-04 15:29:48 +02:00
nvnieuwk	994cd6d171	Merge pull request #1610 from nvnieuwk/new-module-hap.py ... New module hap.py	2022-05-04 15:00:45 +02:00
Nicolas Vannieuwkerke	3c66138672	Linting issue + removed the contains lines	2022-05-04 14:49:17 +02:00
Nicolas Vannieuwkerke	5889d6c923	Another possible fix for the pytest issues	2022-05-04 14:46:15 +02:00
Nicolas Vannieuwkerke	583ea13800	Another try to fix the pytest issues	2022-05-04 14:22:55 +02:00
Nicolas Vannieuwkerke	17dbd2bb82	Linting issue fixed	2022-05-04 14:18:56 +02:00
Nicolas Vannieuwkerke	505ab03803	fixed a description	2022-05-04 14:14:53 +02:00
Nicolas Vannieuwkerke	c1393bf999	Possible fix for the pytest errors?	2022-05-04 14:14:01 +02:00
Nicolas Vannieuwkerke	177a7e49f2	Fixed a linting issue	2022-05-04 14:06:42 +02:00
Nicolas Vannieuwkerke	000b8ee2e0	Merge branch 'new-module-hap.py' of github.com:nvnieuwk/modules into new-module-hap.py	2022-05-04 14:05:23 +02:00
Nicolas Vannieuwkerke	065a5d6a7f	Fixed a linting issue	2022-05-04 14:05:21 +02:00
nvnieuwk	c9808cb97f	Merge branch 'master' into new-module-hap.py	2022-05-04 14:01:02 +02:00
Nicolas Vannieuwkerke	37338ecee3	Finished the module	2022-05-04 14:00:02 +02:00
Ramprasad Neethiraj	6541e151bc	Merge branch 'master' into feat/update_cnvpytor	2022-05-04 13:54:46 +02:00
Nicolas Vannieuwkerke	c517ce9b4d	Added the module and some simple testing	2022-05-04 13:42:12 +02:00
Lauri Mesilaakso	530b5ac661	Merge branch 'master' into add_compression_to_bam2fq	2022-05-04 09:53:46 +03:00
Chris Cheshire	7949c1f048	Merge pull request #1607 from luslab/expected_error_fix ... Bowtie2 - Added support for large indexes and improved error reporting	2022-05-03 22:27:45 +01:00
Chris Cheshire	79e64cdd1f	Merge branch 'master' into expected_error_fix	2022-05-03 22:21:28 +01:00
JIANHONG OU	dc59ad0bf5	fix the version issue.	2022-05-03 12:27:39 -04:00
Lauri Mesilaakso	12f79c2101	Merge branch 'master' into add_compression_to_bam2fq	2022-05-03 17:03:02 +03:00
ljmesi	a39fa4e003	Fix checksum for one file	2022-05-03 15:47:49 +02:00
nvnieuwk	1f906a7c6a	Merge pull request #1608 from nvnieuwk/vardict-java-update ... Small update to vardict-java	2022-05-03 15:37:52 +02:00
Nicolas Vannieuwkerke	96d4a31cc1	Moved the BED file to the main tuple	2022-05-03 15:31:05 +02:00
ljmesi	034352dbbf	Merge branch 'add_compression_to_bam2fq' of https://github.com/Genomic-Medicine-Linkoping/modules into add_compression_to_bam2fq	2022-05-03 15:18:12 +02:00
ljmesi	5510ea39fe	Test --no-name to solve inconsistent checksums	2022-05-03 15:18:09 +02:00
Ramprasad Neethiraj	26311aba2a	fix minor errors	2022-05-03 15:04:37 +02:00
Ramprasad Neethiraj	be085c0173	Merge branch 'master' of https://github.com/nf-core/modules into feat/update_cnvpytor	2022-05-03 14:55:42 +02:00
Ramprasad Neethiraj	19cfb4e951	update meta files	2022-05-03 14:53:56 +02:00
Ramprasad Neethiraj	46e5752b82	update tests	2022-05-03 14:32:45 +02:00
Ramprasad Neethiraj	3efa931bf6	view	2022-05-03 14:26:46 +02:00
Ramprasad Neethiraj	829c15c98b	partition	2022-05-03 14:26:34 +02:00
Ramprasad Neethiraj	7cc47f6ba6	importrd	2022-05-03 14:25:20 +02:00
Ramprasad Neethiraj	07e026054a	histogram	2022-05-03 14:24:54 +02:00
Ramprasad Neethiraj	2990dc8357	callcnv module	2022-05-03 14:20:05 +02:00
Lauri Mesilaakso	a65e76e3dd	Merge branch 'master' into add_compression_to_bam2fq	2022-05-03 14:30:54 +03:00
Chris Cheshire	6f35537d40	Merge branch 'master' into expected_error_fix	2022-05-03 12:21:51 +01:00
Chris Cheshire	1baf143607	Merge pull request #1548 from rpetit3/rp3-add-shigatyper ... add module for shigatyper	2022-05-03 12:21:43 +01:00
Chris Cheshire	829183ee84	Merge branch 'master' into rp3-add-shigatyper	2022-05-03 12:16:54 +01:00
Chris Cheshire	b3ee6384e6	Merge pull request #1604 from nf-core/add-slimfastq ... feat: add module for slimfastq	2022-05-03 12:16:41 +01:00
Chris Cheshire	6015478b72	Merge branch 'master' into add-slimfastq	2022-05-03 12:11:19 +01:00
Chris Cheshire	d7fb969a74	Merge branch 'master' into rp3-add-shigatyper	2022-05-03 12:10:23 +01:00
Chris Cheshire	40e6bd9dc1	bowtie2|fix tags error	2022-05-03 12:07:04 +01:00
Chris Cheshire	0f1ee7e50d	bowtie2|test fixes	2022-05-03 12:04:51 +01:00
Chris Cheshire	61f68913fe	Merge branch 'master' into expected_error_fix	2022-05-03 11:49:35 +01:00
Chris Cheshire	768073be63	bowtie2|Added support for large indexes	2022-05-03 11:46:19 +01:00
Lauri Mesilaakso	6367c6a1ad	Merge branch 'master' into add_compression_to_bam2fq	2022-05-03 11:41:25 +03:00
James A. Fellows Yates	b61cdc7355	Merge pull request #1570 from nvnieuwk/vardict-java ... new_module:vardict-java	2022-05-03 10:26:41 +02:00
nvnieuwk	f85787b19e	Merge branch 'master' into vardict-java	2022-05-03 10:17:04 +02:00