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Author	SHA1	Message	Date
Matthias De Smet	94e8c3a882	Update tests/modules/bowtie2/align/test.yml ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2022-05-11 13:56:03 +02:00
Matthias De Smet	9dd083fa94	Update modules/bowtie2/align/main.nf ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2022-05-11 13:55:55 +02:00
Matthias De Smet	0d00452eca	Update tests/modules/bowtie2/align/test.yml ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2022-05-11 13:55:45 +02:00
Matthias De Smet	dcffd93875	Merge branch 'master' into update/bowtie2-align	2022-05-11 13:34:24 +02:00
CMGG ICT Team	3ae8cbfad7	bowtie2: remove code duplication	2022-05-11 13:32:56 +02:00
Harshil Patel	9602b989eb	Merge pull request #1632 from nf-core/refactor-fasterq-dump ... Refactor fasterq dump	2022-05-11 12:14:22 +01:00
Moritz E. Beber	0cdf7767a7	refactor: require NCBI user settings always	2022-05-11 13:02:52 +02:00
Moritz E. Beber	eae7161a32	tests: add settings input or not and test all branches	2022-05-11 12:47:54 +02:00
Moritz E. Beber	d4f13ebfff	refactor: create new settings input	2022-05-11 12:47:54 +02:00
Moritz E. Beber	5d593bdb45	docs: correct license and input description	2022-05-11 12:47:54 +02:00
Mahesh Binzer-Panchal	fd579ebbb3	Merge branch 'master' into kat_hist	2022-05-11 12:43:11 +02:00
Mahesh Binzer-Panchal	00fcdd0cba	Merge branch 'master' into genomescope2	2022-05-11 12:42:39 +02:00
Mahesh Binzer-Panchal	d54cf467f4	Update outputs and test data set	2022-05-11 10:42:17 +00:00
Harshil Patel	79bf60fa11	Merge pull request #1631 from nf-core/refactor-prefetch ... Refactor prefetch	2022-05-11 11:29:02 +01:00
Harshil Patel	7be7f404d5	Merge branch 'master' into refactor-prefetch	2022-05-11 11:28:02 +01:00
jasmezz	2b746abfbe	Fix Prettier linting issue	2022-05-11 12:09:52 +02:00
jasmezz	5d76f1c7ff	Add fasta/gff input option	2022-05-11 12:06:02 +02:00
Jasmin F	9cce4a00b2	Merge branch 'nf-core:master' into antismashlite	2022-05-11 12:03:30 +02:00
Mahesh Binzer-Panchal	0774704038	Merge branch 'master' into genomescope2	2022-05-11 11:38:36 +02:00
Mahesh Binzer-Panchal	7a16ece747	Change md5sum to contains	2022-05-10 15:13:25 +00:00
Mahesh Binzer-Panchal	cd32c7f744	Merge branch 'master' into kat_hist	2022-05-10 17:03:00 +02:00
Mahesh Binzer-Panchal	9b4923dcd5	Change test files	2022-05-10 15:02:37 +00:00
Praveen Raj S	ae55653c3c	Merge pull request #1638 from rannick/master ... Update arriba	2022-05-10 14:39:29 +02:00
Mahesh Binzer-Panchal	b875cfb744	Merge branch 'master' into kat_hist	2022-05-10 14:36:18 +02:00
Praveen Raj S	237971cd15	Merge branch 'master' into master	2022-05-10 14:35:41 +02:00
nvnieuwk	914e56163a	Merge pull request #1624 from nvnieuwk/new-module-rtg/vcfeval ... New module rtg/vcfeval	2022-05-10 13:41:20 +02:00
Nicolas Vannieuwkerke	c9cd7be8df	Merge branch 'new-module-rtg/vcfeval' of github.com:nvnieuwk/modules into new-module-rtg/vcfeval	2022-05-10 13:33:40 +02:00
Nicolas Vannieuwkerke	fa7c947c35	Adjusted meta	2022-05-10 13:33:37 +02:00
nvnieuwk	d3927aae99	Update modules/rtgtools/vcfeval/main.nf ... Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>	2022-05-10 13:26:14 +02:00
nvnieuwk	7fc4cc5a38	Update modules/rtgtools/vcfeval/main.nf ... Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>	2022-05-10 13:23:22 +02:00
Nicolas Vannieuwkerke	b7134855e4	Small update on the output channels	2022-05-10 12:34:52 +02:00
Moritz E. Beber	1b228835e9	refactor: require settings input always	2022-05-10 12:29:42 +02:00
Nicolas Vannieuwkerke	c18391aa49	Updated meta.yml	2022-05-10 12:26:13 +02:00
nvnieuwk	2eb77bd64e	Update modules/rtgtools/vcfeval/main.nf ... Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>	2022-05-10 12:22:56 +02:00
nvnieuwk	29f2d3c284	Update modules/rtgtools/vcfeval/main.nf ... Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>	2022-05-10 12:22:49 +02:00
Nicolas Vannieuwkerke	ef4857ec54	Updated meta.yml	2022-05-10 12:20:01 +02:00
Moritz E. Beber	a303904eb0	chore: add settings file to test data config	2022-05-10 12:19:25 +02:00
Moritz E. Beber	09bfe3c618	Apply suggestions from code review ... Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2022-05-10 12:16:57 +02:00
Moritz E. Beber	b1e134fdd7	docs: describe new file input	2022-05-10 12:16:57 +02:00
Moritz E. Beber	145e2f80e9	tests: run prefetch with and without given settings	2022-05-10 12:16:57 +02:00
Moritz E. Beber	f6936e5270	refactor: accept settings as input	2022-05-10 12:16:57 +02:00
Moritz E. Beber	46a9aabfa3	chore: improve license description	2022-05-10 12:16:57 +02:00
Nicolas Vannieuwkerke	f3d5584ab0	Linting	2022-05-10 12:08:23 +02:00
Nicolas Vannieuwkerke	5db26f9f35	Linting	2022-05-10 12:07:11 +02:00
Nicolas Vannieuwkerke	3a064b0a99	Split the output to different channels	2022-05-10 12:05:42 +02:00
Nicolas Vannieuwkerke	6008619603	test issue fix?	2022-05-10 10:20:54 +02:00
Nicolas Vannieuwkerke	96c3f895b9	test issue fix?	2022-05-10 10:19:13 +02:00
Nicolas Vannieuwkerke	42fbf80c72	Fixed a test issue with wrong md5sum	2022-05-10 09:57:49 +02:00
Nicolas Vannieuwkerke	f0e8f6ce4d	Linting	2022-05-10 09:36:54 +02:00
Nicolas Vannieuwkerke	e5d091ad4b	Merge branch 'new-module-rtg/vcfeval' of github.com:nvnieuwk/modules into new-module-rtg/vcfeval	2022-05-10 09:35:44 +02:00