Moritz E. Beber
b1e134fdd7
docs: describe new file input
2022-05-10 12:16:57 +02:00
Moritz E. Beber
46a9aabfa3
chore: improve license description
2022-05-10 12:16:57 +02:00
Matthias Hörtenhuber
e745e167c1
Fix formatting in yaml files, add yamllint config ( #1279 )
...
* fix yml formatting
* allow fastq.gz and fq.gz as file input, add meta.yml and test
* fix yaml files
* Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test"
This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4.
* prettier magic!
* fix comments for yamllint
* remove node version number
* fix linting errors
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00
Kevin
3aacd46da2
Backfill software licenses meta ( #876 )
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* backfilled modules with meta.yml that had no license identifier
* harmonized BSD license names
* whitespace linting at modules/unzip/meta.yml:12
* harmonized software from US NIH-NCBI/NIST to 'US-Government-Work'
* Update modules/bcftools/index/meta.yml
`bcftools` is dual-licensed, use associative array to allow for multiple licenses
Co-authored-by: Michael L Heuer <heuermh@acm.org>
Co-authored-by: Michael L Heuer <heuermh@acm.org>
2021-10-22 15:39:54 -07:00
Moritz E. Beber
07c0830057
Add a module for sra-tools prefetch ( #714 )
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* chore: apply module template
* refactor: add NCBI settings to options
* docs: complete meta information
* feat: add prefetch process
* fix: correct bash commands
* tests: define the right tests
* style: move option definition to satisfy linting
* fix: extract version correctly
* fix: correct newline issues
* refactor: address review comments
* Apply suggestions from code review
* chore: add retrying via nf-core label
* refactor: validate download thoroughly
* refactor: remove vdb-config input
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-10-11 22:30:41 +01:00
