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Author	SHA1	Message	Date
drpatelh	bdfe187440	Add TODO comments	2020-08-07 10:58:36 +01:00
drpatelh	9296897009	Define options as input	2020-08-07 10:58:24 +01:00
Harshil Patel	5af5fc395e	Merge pull request #58 from drpatelh/master ... Get tests working for FastQC	2020-08-07 10:11:53 +01:00
drpatelh	6255d9b00c	Fix markdownlint	2020-08-07 10:10:12 +01:00
drpatelh	49e37cb22c	Add profile docker	2020-08-07 10:07:20 +01:00
drpatelh	4f76bb6b03	Add nextflow.config	2020-08-07 10:06:45 +01:00
drpatelh	7efd46b489	Add nextflow.config	2020-08-07 09:59:19 +01:00
drpatelh	fab020461b	Add -with-docker	2020-08-07 09:44:16 +01:00
drpatelh	111b1505fa	Add basedir	2020-08-07 09:40:02 +01:00
drpatelh	75e7e1573c	Add output files	2020-08-07 09:32:28 +01:00
drpatelh	754fad7c8e	Update output paths	2020-08-07 09:32:03 +01:00
drpatelh	268c56c20d	Update README	2020-08-07 09:31:54 +01:00
drpatelh	b0abd14135	Update tests	2020-08-07 09:31:27 +01:00
drpatelh	0466d5249b	Update docs	2020-08-07 00:50:49 +01:00
drpatelh	cb08a7326a	Change NF version	2020-08-07 00:38:56 +01:00
drpatelh	f014e67de6	Remove old outputs	2020-08-07 00:37:13 +01:00
drpatelh	2c7abca088	Move unit tests to deprecated	2020-08-07 00:36:05 +01:00
drpatelh	16d3ad5d06	Adapt script for meta	2020-08-07 00:35:34 +01:00
Harshil Patel	526ad8a457	Merge pull request #56 from drpatelh/master ... Final README updates	2020-08-06 16:33:33 +01:00
drpatelh	a0ca7b1738	Update meta.yml link	2020-08-06 16:30:32 +01:00
drpatelh	c98b32dfa8	Add link to functions file	2020-08-06 16:26:57 +01:00
drpatelh	70607cf5e2	Adjust spacing	2020-08-06 16:19:31 +01:00
drpatelh	b244160e78	Fix indent	2020-08-06 16:18:16 +01:00
drpatelh	bca0d598bf	Add more links	2020-08-06 16:14:36 +01:00
drpatelh	28143c32fd	Add links	2020-08-06 16:12:06 +01:00
drpatelh	5e32585acf	Fix markdownlint	2020-08-06 16:08:52 +01:00
drpatelh	bd137343f0	Remove spaces	2020-08-06 16:07:10 +01:00
drpatelh	14fcbc52f1	Update testing section	2020-08-06 16:04:19 +01:00
Harshil Patel	f10b7810f1	Merge pull request #55 from drpatelh/master ... Add module template	2020-08-06 15:35:11 +01:00
drpatelh	b3e3e43089	Update README	2020-08-06 15:34:44 +01:00
drpatelh	e2b47a6fa3	Add software requirements section	2020-08-06 15:22:32 +01:00
drpatelh	21efc24299	Re-write requirements	2020-08-06 14:50:09 +01:00
drpatelh	1b294f4249	Add guidelines section	2020-08-06 13:43:19 +01:00
drpatelh	c7c65e3ad0	Reword again	2020-08-06 13:38:09 +01:00
drpatelh	259c4f9634	Reword sentence	2020-08-06 13:36:27 +01:00
drpatelh	f5068c897f	Add example tools	2020-08-06 13:33:16 +01:00
drpatelh	63a2cce2da	Add include section	2020-08-06 13:23:56 +01:00
drpatelh	7b3bc338d4	Add info about GitHub API	2020-08-06 13:04:23 +01:00
drpatelh	154d2b0c08	Add separate bullet	2020-08-06 12:57:53 +01:00
drpatelh	4f82982d04	Truncate console text	2020-08-06 12:55:36 +01:00
drpatelh	9bd5596732	Add citation to TOC	2020-08-06 12:52:55 +01:00
drpatelh	680c58315a	Add citation	2020-08-06 12:52:04 +01:00
drpatelh	9c8d3af66e	Add direct Slack link	2020-08-06 12:46:36 +01:00
drpatelh	3e0c63a0a0	Update badge	2020-08-06 12:42:45 +01:00
drpatelh	3428157910	Add badges	2020-08-06 12:39:33 +01:00
drpatelh	d510854648	Add note about other commands	2020-08-06 12:27:01 +01:00
drpatelh	9142ad7016	Move terminology to bottom	2020-08-06 12:17:24 +01:00
drpatelh	c2f797d820	Update existing pipeline usage	2020-08-06 12:12:40 +01:00
drpatelh	2c9cd2d89b	Update main script	2020-08-06 12:00:38 +01:00
drpatelh	83b61fcccd	Update README	2020-08-06 12:00:24 +01:00