4 commits

Author	SHA1	Message	Date
Matthias De Smet	a9521de5ac	bclconvert: Update Dockerfile (#1819) ... * Update Dockerfile * Output only top level InterOp files * Update tag	2022-06-28 11:11:16 +01:00
Matthias De Smet	5e2325956c	bump bclconvert version (#1806)	2022-06-24 07:14:42 +02:00
Matthias De Smet	f32dc15414	update bclconvert module, as used in nf-core/demultiplex (#1569) ... * update bclconvert module, as used in nf-core/demultiplex * reconfigure test with new test data * update test * formatting * update outputs, update meta * update module and test * update test config, test.yml * fix linting * emit logs and reports as dir * fix typo, recreate test.yml * fix linting Co-authored-by: CMGG ICT Team <ict@cmgg.be>	2022-06-16 15:03:13 +02:00
Matthias De Smet	f4c69bc427	Module/bclconvert (#1485) ... * bclconvert: initial commit * add most of tool * attempt at adding testing stub * add dockerfile + instructions * add container to module * update readme * more attempts at making stubs work * finish stub run * fix ci issues * more fixes to stub * add read version check to stub * fix some tests * update readme * fix version number * syntax fix * revert edit to output directory * Update modules/bclconvert/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/bclconvert/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * update meta.yaml * update thread usage * Update modules/bclconvert/main.nf Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com> * Escape env variable * Update modules/bclconvert/Dockerfile Co-authored-by: Mark Whelan <7407040+MrMarkW@users.noreply.github.com> * fix comments by @Emiller88 * fix task.cpus Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com> Co-authored-by: Mark Whelan <7407040+MrMarkW@users.noreply.github.com>	2022-04-21 15:39:22 +02:00