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Author	SHA1	Message	Date
Alexander Peltzer	771e53625b	Update README.md	2020-03-16 14:42:22 +01:00
Alexander Peltzer	05b4bbe8a1	Update README.md	2020-03-16 14:39:27 +01:00
Alexander Peltzer	f091e174c0	Update README.md	2020-03-16 14:37:07 +01:00
Alexander Peltzer	9753e803e0	Update README.md	2020-03-16 14:27:08 +01:00
Alexander Peltzer	4303ec700c	Propose module organization ... See above changes to readme :_)	2020-03-16 14:06:03 +01:00
FelixKrueger	0ceb45068e	FastQ Screen works with E coli paired-end test file	2020-03-10 22:14:25 +00:00
FelixKrueger	d9a3b02b00	Updated yaml description	2020-03-10 14:13:36 +00:00
JoseEspinosa	787bf44c62	Name was fixed to tcoffee instead of FastQC (used as template)	2020-03-06 16:35:02 +01:00
Piotr Faba	6fd86ad9e5	2 tests	2020-03-06 14:56:33 +00:00
Piotr Faba	fa134a1196	fix path error	2020-03-06 14:54:26 +00:00
Piotr Faba	2646e55e2b	get test working	2020-03-06 14:50:29 +00:00
Piotr Faba	660be04708	fix test	2020-03-06 14:41:37 +00:00
Piotr Faba	36cad50593	test submodules checkout	2020-03-06 14:38:49 +00:00
Piotr Faba	977a9b3ee8	test fix	2020-03-06 14:34:34 +00:00
Phil Ewels	c8ceddfe77	Tidying, add samtools and trim_galore	2020-03-06 14:33:48 +00:00
Piotr Faba	f33dd2d2e9	add ci test	2020-03-06 14:31:44 +00:00
Piotr Faba	c90474202c	update meta	2020-03-06 14:23:32 +00:00
Phil Ewels	198e9a85eb	FastQC: add dockerfile and environment.yml	2020-03-06 14:04:18 +00:00
Piotr Faba	1c941ef8d6	Update test-data commit and references	2020-03-06 13:59:14 +00:00
Piotr Faba	490eca706c	single and paired end supported	2020-03-06 13:23:12 +00:00
FelixKrueger	a6f7296e22	Initial commit	2020-03-06 13:21:17 +00:00
Phil Ewels	b3cc751e78	Build tool docker images: first attempt	2020-03-06 11:54:09 +00:00
JoseEspinosa	bcc89c27ca	Fixing command to run nxf	2020-03-06 12:47:55 +01:00
JoseEspinosa	7fe0a936f6	Fixing another typo on the yml for CI github actions	2020-03-06 12:41:07 +01:00
JoseEspinosa	36c0c56fdd	Fixing typo on the yml for CI github actions	2020-03-06 12:38:21 +01:00
JoseEspinosa	5f9cf40f5a	Changing publishDir to take params.outdir and modifying yml for github actions	2020-03-06 12:23:23 +01:00
JoseEspinosa	5de4c86bac	symlink working? (github actions error)	2020-03-06 12:02:40 +01:00
Piotr Faba	88bc7dcdd8	the module is working in test	2020-03-06 10:51:46 +00:00
JoseEspinosa	4312ddc1fe	Is the file in the submodule? (github actions error)	2020-03-06 11:46:37 +01:00
JoseEspinosa	c8c2d0e659	Trying to fix git actions	2020-03-05 17:48:10 +01:00
JoseEspinosa	5bb7d9c497	Updating submodule with tcoffee dataset	2020-03-05 17:39:00 +01:00
Jeremy1805	60f1d3b7a1	Updated tools/bwa/mem/meta.yml	2020-03-05 16:35:56 +00:00
Jeremy1805	356e23823c	Updated tools/bwa/mem/meta.yml	2020-03-05 16:31:46 +00:00
JoseEspinosa	707d2855d6	Adding tcoffee module	2020-03-05 17:18:35 +01:00
JoseEspinosa	17ccbce67b	Update test-datasets with msa data	2020-03-05 17:17:14 +01:00
Jeremy1805	a4836ae3c3	Added tools/bwa/mem	2020-03-05 16:06:25 +00:00
Piotr Faba	97d9ae76f0	add cutadapt module	2020-03-05 15:56:11 +00:00
annacprice	e623dca3b7	initial commit of shovill	2020-03-05 09:29:23 +00:00
MaxUlysse	3e8475baf0	add social preview image	2020-02-12 15:27:56 +01:00
Maxime Garcia	f62fad63ca	Merge pull request #12 from MaxUlysse/dev ... Add some modules	2020-02-10 17:10:35 +01:00
Maxime Garcia	48be154434	Update tools/bwa/index/meta.yml ... Co-Authored-By: Olga Botvinnik <olga.botvinnik@gmail.com>	2020-01-24 10:39:52 +01:00
MaxUlysse	7fbfd2d6cb	add samtools faidx to index fasta file	2020-01-23 11:36:21 +01:00
MaxUlysse	b8dda67338	add htslib tabix to index bgzipped vcf files	2020-01-23 11:35:49 +01:00
MaxUlysse	9db873c3bc	add gatk dict to create dictionnary from fasta file	2020-01-23 11:35:19 +01:00
MaxUlysse	a69aebd01b	fix index process	2020-01-23 10:19:00 +01:00
MaxUlysse	ad3c14a964	fix typo	2020-01-21 11:25:13 +01:00
MaxUlysse	1f46499e3b	add bwa index	2020-01-21 11:24:32 +01:00
Phil Ewels	a88b867498	Merge pull request #10 from ewels/master ... Fix trim galore process name	2019-12-06 11:24:45 +01:00
Phil Ewels	5fbde1c69d	Fix trim galore process name	2019-12-06 11:24:07 +01:00
Phil Ewels	4eb1428931	Added empty test_import.nf file	2019-12-06 10:38:57 +01:00