Commit graph

23 commits

Author SHA1 Message Date
sruthipsuresh
957983bd99 Fixed and tested 4 modules, keeping with fastp module syntax 2021-01-29 23:17:44 -06:00
sruthipsuresh
295fff35ec Corrected containers and tested 2021-01-29 23:17:44 -06:00
sruthipsuresh
19b55fc67c Fixed intersect, complement indentation issues 2021-01-29 23:17:44 -06:00
sruthipsuresh
3da39dfc88 Fixed bedtools complement module 2021-01-29 23:17:44 -06:00
sruthipsuresh
8496427c56 Update software/bedtools/complement/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-01-29 23:17:44 -06:00
sruthipsuresh
fc8cdde2b4 Apply suggestions from code review
Add all initial suggestions from review (syntax issues)

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-01-29 23:17:44 -06:00
sruthipsuresh
e5c21d15a3 Update software/bedtools/complement/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-01-29 23:17:44 -06:00
sruthipsuresh
bf2703f396 Update software/bedtools/complement/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-01-29 23:17:44 -06:00
sruthipsuresh
93f640154a Update software/bedtools/complement/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-01-29 23:17:44 -06:00
sruthipsuresh
ced2458d78 Update software/bedtools/complement/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-01-29 23:17:44 -06:00
sruthipsuresh
70de0331a5 Corrected pytest and config 2021-01-29 23:17:44 -06:00
sruthipsuresh
672f94f2af rebased and updated all bedtools testing and modules 2021-01-29 23:17:44 -06:00
sruthipsuresh
78473edb72 Removed large testing files, will convert to updated testing 2021-01-29 23:17:44 -06:00
Sruthi Suresh
4fca435120 Fixed naming issues and links in meta.yml 2021-01-29 23:17:44 -06:00
Sruthi Suresh
a984c1be7c Added all modules with basic functionality and updated meta.yml files. 2021-01-29 23:17:44 -06:00
Sruthi Suresh
89e5473b44 Updated modules with the changed container format 2021-01-29 23:17:44 -06:00
Sruthi Suresh
6677c98b11 Updated complement and completed slop module with all parameters available. 2021-01-29 23:17:44 -06:00
Sruthi Suresh
199dfc5ea3 Added complement module with necessary test dir/parameters 2021-01-29 23:17:44 -06:00
drpatelh
c08e6959a5 Reorganise everything 2020-08-05 16:09:25 +01:00
JoseEspinosa
759dd85c92 Removing biocontainer in favor of nf-core container 2020-07-16 10:22:09 +02:00
JoseEspinosa
2cbc988d5f Bedtools complement adapted to the current module standard 2020-07-15 18:15:16 +02:00
JoseEspinosa
562fc74550 Indentation error in yml 2020-07-14 17:57:42 +02:00
JoseEspinosa
71eaa83bf6 bedtoools/complementBed changed to bedtools/complement 2020-07-14 17:26:45 +02:00