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Author SHA1 Message Date
Chris Cheshire
9945ac88e0 luslab-umitools | Module feature complete 2020-06-19 08:21:55 +01:00
Chris Cheshire
436d6a6292 luslab-umitools | Updating module definition 2020-06-18 16:54:14 +01:00
Chris Cheshire
1cbfd0d125 luslab-umitools | Changed sample file names 2020-06-18 16:14:26 +01:00
Chris Cheshire
ceb1a6ef1a luslab-umitools | Cleaned up sample file names 2020-06-18 15:44:27 +01:00
Chris Cheshire
9092ae8c01 luslab-umitools | Cleaned up docker files and removed groovy dependancy 2020-06-18 15:40:24 +01:00
Gregor Sturm
d25e5bf402
Update .editorconfig 
Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
 2020-06-15 16:47:42 +02:00
Gregor Sturm
a2824cc580
Update .editorconfig 
Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
 2020-06-15 16:27:20 +02:00
Gregor Sturm
bc1f77f0f9
Create .editorconfig 2020-06-15 15:57:51 +02:00
Candice
6ecf54d73c luslab-umitools | Added SAM/BAM options and group/dedup options 2020-06-04 17:01:46 +02:00
Candice
c5e958cc4f luslab-umitools | Added Nextflow config file 2020-06-04 17:00:25 +02:00
Candice
3520cfea42 Merge remote-tracking branch 'origin/feat-mod-umitools' into feat-mod-umitools 2020-06-03 18:41:51 +02:00
Candice
064bd11ebf luslab-umitools | Added single-cell RNA-seq options and grouping option 2020-06-03 18:41:34 +02:00
Candice
1508596f14 luslab-umitools | Edited Dockerfile in umi_tools 2020-06-03 18:41:34 +02:00
Candice
c09a9c7796 luslab-umitools | Added single-cell RNA-seq options and grouping option 2020-06-03 18:41:11 +02:00
Candice
addb4122fd luslab-umitools |Edited Dockerfile in umi_tools 2020-06-03 11:22:27 +02:00
Candice
07b485eeec luslab-umitools | Minor corrections to main.nf in umi_tools/dedup 2020-06-02 19:05:08 +02:00
Candice
08d26794b5 luslab-umitools | Created yml file for dedup in umi_tools 2020-06-02 19:02:18 +02:00
Candice
3aace7c0c2 luslab-umitools | Added sample_id options in dedup 2020-06-02 18:45:55 +02:00
Candice
6970d25b59 luslab-umitools | Added basic options to dedup tool in umi_tools 2020-06-02 17:23:54 +02:00
Candice
4656667374 luslab-umitools | Renamed params and changed relative paths 2020-06-01 16:41:47 +02:00
Candice
ff0265fda4 luslab-umitools | Added input folder in dedup/test 2020-06-01 16:21:29 +02:00
Candice
e46db6d31d luslab-umitools | Created conda environment for umi_tools 2020-06-01 16:14:13 +02:00
Candice
5f82d0a702 luslab-umitools | Customized Dockerfile for umi_tools 2020-06-01 16:13:30 +02:00
Candice
7cc1319801 luslab-umitools | Renamed dedup.nf to main.nf 2020-06-01 15:18:49 +02:00
Candice
e00b7bd91e luslab-umitools | Added parameter overriding function to umi_tools 2020-06-01 15:02:21 +02:00
Candice
549f81e4ea luslab-umitools | Created a Dockerfile for umi_tools module 2020-06-01 14:52:43 +02:00
Candice
bfdccfe1b9 luslab-umitools | Initialized test.nf 2020-06-01 14:40:50 +02:00
Candice
ab2d819df3 luslab-umitools | Renamed umi-tools.nf to dedup.nf 2020-06-01 14:40:50 +02:00
Candice
ff243acf63 luslab-umitools | Created umitool.nf file in the dedup folder 2020-06-01 14:40:50 +02:00
Candice
baa5805350 luslab-umitools | Created test.nf and test folder in umi_tools/dedup 2020-06-01 14:40:50 +02:00
FelixKrueger
a2104ca3b9 Added HISAT2 module and test workflow 2020-03-20 11:04:25 +00:00
FelixKrueger
a526551300 Added Bowtie2 module and test workflow 2020-03-19 18:13:15 +00:00
FelixKrueger
974c6168d6 Added short description of MultiQC 2020-03-18 10:06:38 +00:00
FelixKrueger
223077e5a6 MultiQC module and test workflow 2020-03-17 21:46:21 +00:00
FelixKrueger
6208ac9799 Added functional Trim Galore module 2020-03-16 17:49:39 +00:00
Alexander Peltzer
9dee710b04
Merge pull request #25 from piotr-faba-ardigen/add_cutadapt_tool 
Add cutadapt tool
 2020-03-16 18:46:00 +01:00
Harshil Patel
7738dbe4df
Merge pull request #26 from nf-core/readme-update-modules 
Propose module organization
 2020-03-16 14:49:24 +00:00
Harshil Patel
5e71d61f27
Update README.md 2020-03-16 14:47:20 +00:00
Harshil Patel
d553406fa5
Update README.md 2020-03-16 14:47:11 +00:00
Harshil Patel
300e89c4dc
Update README.md 2020-03-16 14:47:03 +00:00
Alexander Peltzer
95d57bcef2
Apply suggestions from code review 
Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
 2020-03-16 15:42:52 +01:00
FelixKrueger
f8916eb9b5 FastQC module is working and now accepting arguments 2020-03-16 14:17:38 +00:00
Alexander Peltzer
771e53625b
Update README.md 2020-03-16 14:42:22 +01:00
Alexander Peltzer
05b4bbe8a1
Update README.md 2020-03-16 14:39:27 +01:00
Alexander Peltzer
f091e174c0
Update README.md 2020-03-16 14:37:07 +01:00
Alexander Peltzer
9753e803e0
Update README.md 2020-03-16 14:27:08 +01:00
Alexander Peltzer
4303ec700c
Propose module organization 
See above changes to readme :_)
 2020-03-16 14:06:03 +01:00
FelixKrueger
0ceb45068e FastQ Screen works with E coli paired-end test file 2020-03-10 22:14:25 +00:00
FelixKrueger
d9a3b02b00 Updated yaml description 2020-03-10 14:13:36 +00:00
JoseEspinosa
787bf44c62 Name was fixed to tcoffee instead of FastQC (used as template) 2020-03-06 16:35:02 +01:00