millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-09-21 15:52:05 +00:00
Code Issues Releases Packages Activity
218 commits 30 branches 0 tags 142 MiB
Commit graph

218 commits

This branch
This branch
All branches
Author SHA1 Message Date
JoseEspinosa
787bf44c62 Name was fixed to tcoffee instead of FastQC (used as template) 2020-03-06 16:35:02 +01:00
Piotr Faba
6fd86ad9e5 2 tests 2020-03-06 14:56:33 +00:00
Piotr Faba
fa134a1196 fix path error 2020-03-06 14:54:26 +00:00
Piotr Faba
2646e55e2b get test working 2020-03-06 14:50:29 +00:00
Piotr Faba
660be04708 fix test 2020-03-06 14:41:37 +00:00
Piotr Faba
36cad50593 test submodules checkout 2020-03-06 14:38:49 +00:00
Piotr Faba
977a9b3ee8 test fix 2020-03-06 14:34:34 +00:00
Phil Ewels
c8ceddfe77 Tidying, add samtools and trim_galore 2020-03-06 14:33:48 +00:00
Piotr Faba
f33dd2d2e9 add ci test 2020-03-06 14:31:44 +00:00
Piotr Faba
c90474202c update meta 2020-03-06 14:23:32 +00:00
Phil Ewels
198e9a85eb FastQC: add dockerfile and environment.yml 2020-03-06 14:04:18 +00:00
Piotr Faba
1c941ef8d6 Update test-data commit and references 2020-03-06 13:59:14 +00:00
Piotr Faba
490eca706c single and paired end supported 2020-03-06 13:23:12 +00:00
FelixKrueger
a6f7296e22 Initial commit 2020-03-06 13:21:17 +00:00
Phil Ewels
b3cc751e78 Build tool docker images: first attempt 2020-03-06 11:54:09 +00:00
JoseEspinosa
bcc89c27ca Fixing command to run nxf 2020-03-06 12:47:55 +01:00
JoseEspinosa
7fe0a936f6 Fixing another typo on the yml for CI github actions 2020-03-06 12:41:07 +01:00
JoseEspinosa
36c0c56fdd Fixing typo on the yml for CI github actions 2020-03-06 12:38:21 +01:00
JoseEspinosa
5f9cf40f5a Changing publishDir to take params.outdir and modifying yml for github actions 2020-03-06 12:23:23 +01:00
JoseEspinosa
5de4c86bac symlink working? (github actions error) 2020-03-06 12:02:40 +01:00
Piotr Faba
88bc7dcdd8 the module is working in test 2020-03-06 10:51:46 +00:00
JoseEspinosa
4312ddc1fe Is the file in the submodule? (github actions error) 2020-03-06 11:46:37 +01:00
JoseEspinosa
c8c2d0e659 Trying to fix git actions 2020-03-05 17:48:10 +01:00
JoseEspinosa
5bb7d9c497 Updating submodule with tcoffee dataset 2020-03-05 17:39:00 +01:00
Jeremy1805
60f1d3b7a1 Updated tools/bwa/mem/meta.yml 2020-03-05 16:35:56 +00:00
Jeremy1805
356e23823c Updated tools/bwa/mem/meta.yml 2020-03-05 16:31:46 +00:00
JoseEspinosa
707d2855d6 Adding tcoffee module 2020-03-05 17:18:35 +01:00
JoseEspinosa
17ccbce67b Update test-datasets with msa data 2020-03-05 17:17:14 +01:00
Jeremy1805
a4836ae3c3 Added tools/bwa/mem 2020-03-05 16:06:25 +00:00
Piotr Faba
97d9ae76f0 add cutadapt module 2020-03-05 15:56:11 +00:00
annacprice
e623dca3b7 initial commit of shovill 2020-03-05 09:29:23 +00:00
MaxUlysse
3e8475baf0 add social preview image 2020-02-12 15:27:56 +01:00
Maxime Garcia
f62fad63ca
Merge pull request #12 from MaxUlysse/dev 
Add some modules
 2020-02-10 17:10:35 +01:00
Maxime Garcia
48be154434
Update tools/bwa/index/meta.yml 
Co-Authored-By: Olga Botvinnik <olga.botvinnik@gmail.com>
 2020-01-24 10:39:52 +01:00
MaxUlysse
7fbfd2d6cb add samtools faidx to index fasta file 2020-01-23 11:36:21 +01:00
MaxUlysse
b8dda67338 add htslib tabix to index bgzipped vcf files 2020-01-23 11:35:49 +01:00
MaxUlysse
9db873c3bc add gatk dict to create dictionnary from fasta file 2020-01-23 11:35:19 +01:00
MaxUlysse
a69aebd01b fix index process 2020-01-23 10:19:00 +01:00
MaxUlysse
ad3c14a964 fix typo 2020-01-21 11:25:13 +01:00
MaxUlysse
1f46499e3b add bwa index 2020-01-21 11:24:32 +01:00
Phil Ewels
a88b867498
Merge pull request #10 from ewels/master 
Fix trim galore process name
 2019-12-06 11:24:45 +01:00
Phil Ewels
5fbde1c69d Fix trim galore process name 2019-12-06 11:24:07 +01:00
Phil Ewels
4eb1428931 Added empty test_import.nf file 2019-12-06 10:38:57 +01:00
Maxime Garcia
9fd356468d
Merge pull request #9 from ewels/master 
Added samtools, restructured directory structures
 2019-12-06 10:37:42 +01:00
Phil Ewels
c77ea13d35 Fixed FastQC tests with submodule 2019-12-06 10:15:49 +01:00
Phil Ewels
93f7b26aa2 Use submodules for test data 2019-12-06 09:24:33 +01:00
Phil Ewels
36df850298 Added test-datasets as a git submodule 2019-12-06 09:19:00 +01:00
Phil Ewels
51bd2c0277 Ansi log false for tests 2019-12-05 22:20:02 +01:00
Phil Ewels
e2a205c8df Added nextflow.config files for all 2019-12-05 22:18:33 +01:00
Phil Ewels
eb41e5ebba FastQC: actually run a test 2019-12-05 22:11:12 +01:00