16 commits

Author	SHA1	Message	Date
Jose Espinosa-Carrasco	572abb00b3	Remove def from module options definition in main (#270) ... * Remove def from module options definition in main * Fix bismark_deduplicate tests * Fix bwameth_align tests * Fixing gatk4 conda tests ("=" instead of ':' in build id) * Same as previous commit (Fix gatk4 test) * Fix qualimap bamqc test (no md5 check for pngs) * Fix seqkit split2 tests. Changed to new test data * Fix samtools tests. Some were missing initOptions include * Removing TOOL SUBTOOL template module since now it is included on tools repo	2021-03-15 12:16:43 +00:00
drpatelh	dcc580e4fb	Remove Conda build ids for all modules	2021-02-16 23:58:23 +00:00
drpatelh	81ae0089bc	Fix merge conflicts	2021-02-05 10:06:39 +00:00
drpatelh	b41c3d63ec	bwa index - add build to conda definition	2021-02-03 09:16:22 +00:00
drpatelh	3ccf99d612	Fix module	2021-02-02 13:37:24 +00:00
drpatelh	0d8bd42cca	Create index in bwa directory	2021-02-02 12:34:23 +00:00
Maxime Garcia	e7474c3d98	Update main.nf ... Use same tag	2021-02-02 12:13:14 +01:00
Edmund Miller	d76638d6f8	style(#77): Fix editorconfig errors	2020-12-17 17:50:24 -06:00
drpatelh	99a2364a26	Update all other modules	2020-12-14 00:05:48 +00:00
drpatelh	a3f46865ff	Remove Singularity image path	2020-11-12 14:55:16 +00:00
drpatelh	1d30e2c21a	Update tools not in rnaseq pipeline too	2020-10-14 18:59:25 +01:00
drpatelh	e438d026bd	Unify syntax	2020-09-10 16:45:11 +01:00
drpatelh	7938a60a02	Add bwa index	2020-08-05 17:15:56 +01:00
drpatelh	c08e6959a5	Reorganise everything	2020-08-05 16:09:25 +01:00
Paolo Di Tommaso	70daf8be30	Minor style improvents ... This commit provides a minor refactoring with som Nextflow code style improvments: - Replaces `.toGiga()` with `.giga` - Replaces `tag { foo }` with `tag "$foo"` - Move publishDir before input declarations. Directives should be before the first input. Tho this is not enforced, it may be in future versions. - Replaces input `file` with `path` - Remove unnecessary parentheses	2020-07-27 12:11:42 +02:00
Phil Ewels	014fef2e92	Rename tools to software	2020-07-11 14:27:21 +02:00

Renamed from tools/bwa/index/main.nf (Browse further)