Robert A. Petit III
|
44e13ae439
|
add module for snippy
|
2022-05-10 21:31:43 +00:00 |
|
Mahesh Binzer-Panchal
|
7a16ece747
|
Change md5sum to contains
|
2022-05-10 15:13:25 +00:00 |
|
Mahesh Binzer-Panchal
|
cd32c7f744
|
Merge branch 'master' into kat_hist
|
2022-05-10 17:03:00 +02:00 |
|
Mahesh Binzer-Panchal
|
9b4923dcd5
|
Change test files
|
2022-05-10 15:02:37 +00:00 |
|
Praveen Raj S
|
ae55653c3c
|
Merge pull request #1638 from rannick/master
Update arriba
|
2022-05-10 14:39:29 +02:00 |
|
Mahesh Binzer-Panchal
|
b875cfb744
|
Merge branch 'master' into kat_hist
|
2022-05-10 14:36:18 +02:00 |
|
Praveen Raj S
|
237971cd15
|
Merge branch 'master' into master
|
2022-05-10 14:35:41 +02:00 |
|
nvnieuwk
|
914e56163a
|
Merge pull request #1624 from nvnieuwk/new-module-rtg/vcfeval
New module rtg/vcfeval
|
2022-05-10 13:41:20 +02:00 |
|
Nicolas Vannieuwkerke
|
c9cd7be8df
|
Merge branch 'new-module-rtg/vcfeval' of github.com:nvnieuwk/modules into new-module-rtg/vcfeval
|
2022-05-10 13:33:40 +02:00 |
|
Nicolas Vannieuwkerke
|
fa7c947c35
|
Adjusted meta
|
2022-05-10 13:33:37 +02:00 |
|
nvnieuwk
|
d3927aae99
|
Update modules/rtgtools/vcfeval/main.nf
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
|
2022-05-10 13:26:14 +02:00 |
|
nvnieuwk
|
7fc4cc5a38
|
Update modules/rtgtools/vcfeval/main.nf
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
|
2022-05-10 13:23:22 +02:00 |
|
Nicolas Vannieuwkerke
|
b7134855e4
|
Small update on the output channels
|
2022-05-10 12:34:52 +02:00 |
|
Moritz E. Beber
|
1b228835e9
|
refactor: require settings input always
|
2022-05-10 12:29:42 +02:00 |
|
Nicolas Vannieuwkerke
|
c18391aa49
|
Updated meta.yml
|
2022-05-10 12:26:13 +02:00 |
|
nvnieuwk
|
2eb77bd64e
|
Update modules/rtgtools/vcfeval/main.nf
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
|
2022-05-10 12:22:56 +02:00 |
|
nvnieuwk
|
29f2d3c284
|
Update modules/rtgtools/vcfeval/main.nf
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
|
2022-05-10 12:22:49 +02:00 |
|
Nicolas Vannieuwkerke
|
ef4857ec54
|
Updated meta.yml
|
2022-05-10 12:20:01 +02:00 |
|
Moritz E. Beber
|
a303904eb0
|
chore: add settings file to test data config
|
2022-05-10 12:19:25 +02:00 |
|
Moritz E. Beber
|
09bfe3c618
|
Apply suggestions from code review
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2022-05-10 12:16:57 +02:00 |
|
Moritz E. Beber
|
b1e134fdd7
|
docs: describe new file input
|
2022-05-10 12:16:57 +02:00 |
|
Moritz E. Beber
|
145e2f80e9
|
tests: run prefetch with and without given settings
|
2022-05-10 12:16:57 +02:00 |
|
Moritz E. Beber
|
f6936e5270
|
refactor: accept settings as input
|
2022-05-10 12:16:57 +02:00 |
|
Moritz E. Beber
|
46a9aabfa3
|
chore: improve license description
|
2022-05-10 12:16:57 +02:00 |
|
Nicolas Vannieuwkerke
|
f3d5584ab0
|
Linting
|
2022-05-10 12:08:23 +02:00 |
|
Nicolas Vannieuwkerke
|
5db26f9f35
|
Linting
|
2022-05-10 12:07:11 +02:00 |
|
Nicolas Vannieuwkerke
|
3a064b0a99
|
Split the output to different channels
|
2022-05-10 12:05:42 +02:00 |
|
Nicolas Vannieuwkerke
|
6008619603
|
test issue fix?
|
2022-05-10 10:20:54 +02:00 |
|
Nicolas Vannieuwkerke
|
96c3f895b9
|
test issue fix?
|
2022-05-10 10:19:13 +02:00 |
|
Nicolas Vannieuwkerke
|
42fbf80c72
|
Fixed a test issue with wrong md5sum
|
2022-05-10 09:57:49 +02:00 |
|
Nicolas Vannieuwkerke
|
f0e8f6ce4d
|
Linting
|
2022-05-10 09:36:54 +02:00 |
|
Nicolas Vannieuwkerke
|
e5d091ad4b
|
Merge branch 'new-module-rtg/vcfeval' of github.com:nvnieuwk/modules into new-module-rtg/vcfeval
|
2022-05-10 09:35:44 +02:00 |
|
Nicolas Vannieuwkerke
|
c69d5cc23e
|
Added evaluation-regions and adjusted the output to now contain all output (and not only the summary)
|
2022-05-10 09:35:42 +02:00 |
|
nvnieuwk
|
95103fbd79
|
Merge branch 'master' into new-module-rtg/vcfeval
|
2022-05-10 09:06:34 +02:00 |
|
Praveen Raj S
|
459a2d1759
|
Merge branch 'master' into master
|
2022-05-09 22:16:59 +02:00 |
|
Mahesh Binzer-Panchal
|
f65d896f57
|
create genomescope2 module
|
2022-05-09 15:09:15 +00:00 |
|
Mahesh Binzer-Panchal
|
2061a41803
|
Merge pull request #1634 from mahesh-panchal/meryl_unionsum
Add meryl unionsum
|
2022-05-09 16:33:04 +02:00 |
|
Mahesh Binzer-Panchal
|
705ad7c3a1
|
Merge branch 'master' into meryl_unionsum
|
2022-05-09 16:20:01 +02:00 |
|
nvnieuwk
|
aceb5220cf
|
Merge branch 'master' into new-module-rtg/vcfeval
|
2022-05-09 16:18:00 +02:00 |
|
FriederikeHanssen
|
36962150ce
|
Merge pull request #1639 from FriederikeHanssen/samtools_convert
Samtools convert
|
2022-05-09 16:17:25 +02:00 |
|
Mahesh Binzer-Panchal
|
83a266ea70
|
Merge branch 'master' into meryl_unionsum
|
2022-05-09 16:16:08 +02:00 |
|
FriederikeHanssen
|
adc4ff868c
|
Merge branch 'master' into samtools_convert
|
2022-05-09 16:15:24 +02:00 |
|
Mahesh Binzer-Panchal
|
3f95464f05
|
Merge pull request #1636 from mahesh-panchal/meryl/histogram
Add meryl histogram
|
2022-05-09 16:15:13 +02:00 |
|
Rike
|
da79396f06
|
rename aligned to alignment
|
2022-05-09 16:07:49 +02:00 |
|
Rike
|
5bd456e5e8
|
rename file_type to output extension
|
2022-05-09 16:06:22 +02:00 |
|
Rike
|
1de1c2253e
|
Combine output after code review
|
2022-05-09 16:04:58 +02:00 |
|
Nicolas Vannieuwkerke
|
bd7e1414a4
|
Fixed meta.yml
|
2022-05-09 15:55:48 +02:00 |
|
nvnieuwk
|
4b8bd9ebf9
|
Merge branch 'master' into new-module-rtg/vcfeval
|
2022-05-09 15:51:31 +02:00 |
|
Nicolas Vannieuwkerke
|
1b63d03f8e
|
adjusted the bed variable name
|
2022-05-09 15:51:19 +02:00 |
|
Mahesh Binzer-Panchal
|
da93beaf60
|
Update pytests
|
2022-05-09 13:50:49 +00:00 |
|